PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0765s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 359aa    MW: 39949.7 Da    PI: 5.0091
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0765s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.3e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rgrWT+eEd++l+++++ +G g+W++ ++  g+ R++k+c++rw +yl
  Kalax.0765s0013.1.p 14 RGRWTAEEDQILIKYIQDHGEGSWRSLPKNAGLMRCGKSCRLRWINYL 61
                         8*********************************************97 PP
2Myb_DNA-binding51.62.2e-1667112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ +++E++l++++++ lG++ W++Ia+ ++ gRt++++k+rw+++l
  Kalax.0765s0013.1.p  67 RGNISPQEEDLIIKLHAALGNR-WSLIASQLP-GRTDNEIKNRWNSHL 112
                          7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-24564IPR009057Homeodomain-like
PROSITE profilePS5129418.127961IPR017930Myb domain
SuperFamilySSF466891.91E-2911108IPR009057Homeodomain-like
SMARTSM007172.4E-131363IPR001005SANT/Myb domain
PfamPF002498.0E-161461IPR001005SANT/Myb domain
CDDcd001671.84E-111661No hitNo description
PROSITE profilePS5129426.30762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-2565116IPR009057Homeodomain-like
SMARTSM007172.6E-1666114IPR001005SANT/Myb domain
PfamPF002494.4E-1567112IPR001005SANT/Myb domain
CDDcd001672.93E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGRAPCCQKV GLKRGRWTAE EDQILIKYIQ DHGEGSWRSL PKNAGLMRCG KSCRLRWINY  60
LRKDLKRGNI SPQEEDLIIK LHAALGNRWS LIASQLPGRT DNEIKNRWNS HLSRSITSWR  120
RPVNDTLPQQ ILDNLAKLMA KPNPSTKKQG SKKNGPANKE TRDKPVTLED DNNDKPQTPD  180
VHKESLPTNS CSQQSLQSIF SLEDRYEAEE GEMDMDLGPV DDYGGVLSLS DMVTPSDPST  240
MMHQPLSPNE ILSPGALLYP EFMNELAGLS TGHAEMGSAS SWLPNCSTST MDNSTTQPSL  300
SSPSSPFTID HLLNISSDWN WEDCVQTPND QDLIMNHEVG SFDNLSWLWD DGGVFGAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-23121162105MYB PROTO-ONCOGENE PROTEIN
1h8a_C4e-231211625128MYB TRANSFORMING PROTEIN
1mse_C2e-23121162105C-Myb DNA-Binding Domain
1msf_C2e-23121162105C-Myb DNA-Binding Domain
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891841.11e-74transcription factor MYB30
TrEMBLA0A481WNS23e-73A0A481WNS2_PAESU; MYB12L protein
STRINGXP_009622107.13e-73(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.17e-69myb domain protein 12