PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0739s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 576aa    MW: 62829.9 Da    PI: 4.6868
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0739s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS453.51.3e-1382095681374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          lv++L++cAea+++++le a +l++++  la++++ +m+++a+yf+eAL++r+++        ++p+e+   n s +   l  f+e++P+
  Kalax.0739s0002.1.p 209 LVHTLMACAEAIQQSKLEVAGTLVNQIGLLAASQAGAMRKVATYFAEALERRIFN--------CHPQESV--NPSFTDLLLMNFYEACPY 288
                          689***************************************************9........3344443..33333334446******* PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          lkf+h+taNqaIlea++g+++vH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+e+g rLa++Ae+++v+fef+ 
  Kalax.0739s0002.1.p 289 LKFAHFTANQAILEAFSGKKEVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPSPDNTDRLREVGLRLAQLAETIHVDFEFRG 378
                          ****************************************************************************************** PP

                 GRAS 181 lvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          +va++l+dl+ ++L+++p   E++aVn+v++lhrll++++++e+    vL+++++++P++v+vveqea+hn++ Fl+rf+e+l+yys+lf
  Kalax.0739s0002.1.p 379 FVANSLADLDASKLELNPsdTESIAVNSVFELHRLLARPGAIEK----VLSVIREIKPEIVTVVEQEANHNGPVFLDRFTESLHYYSTLF 464
                          ******************999***********************....****************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                          dsle +   +s +++++++++lgr+i+nvvaceg +r+erhetl +Wr r+++aGF+pv+++++a kqa++ll  ++ ++gyrvee++g+
  Kalax.0739s0002.1.p 465 DSLEGS---ASTQDKVISEVYLGRQICNVVACEGPDRVERHETLDQWRLRFGSAGFEPVHIGSNAFKQASMLLDLFSgGEGYRVEENNGC 551
                          *****9...699****************************************************************************** PP

                 GRAS 358 lvlgWkdrpLvsvSaWr 374
                          l+lgW++rpL+++SaWr
  Kalax.0739s0002.1.p 552 LMLGWHTRPLIATSAWR 568
                          ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120412.2E-3540105IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011293.9E-3440113No hitNo description
PROSITE profilePS5098567.814183547IPR005202Transcription factor GRAS
PfamPF035144.5E-136209568IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MKRENQYLYP LPDSSGAGSS SGGKGKICWE DDPLPESGVD ELLAVLGYKV KSSDMAEVAQ  60
KLEQLEEVMG SVREDGLSHL ASETVHYNPS DISNWIENML SEFVPPGFDS SLQPLPPASV  120
DSFIPQLDSS ASVNFPGFGG GDTSLPDYDL KAIPGNQIIY SPKQQRQIDE LGGNANKRLK  180
TTVTATEAPL TTSTRPVVLV DSQEAGVRLV HTLMACAEAI QQSKLEVAGT LVNQIGLLAA  240
SQAGAMRKVA TYFAEALERR IFNCHPQESV NPSFTDLLLM NFYEACPYLK FAHFTANQAI  300
LEAFSGKKEV HVIDFSMNQG MQWPALMQAL ALRPGGPPAF RLTGIGPPSP DNTDRLREVG  360
LRLAQLAETI HVDFEFRGFV ANSLADLDAS KLELNPSDTE SIAVNSVFEL HRLLARPGAI  420
EKVLSVIREI KPEIVTVVEQ EANHNGPVFL DRFTESLHYY STLFDSLEGS ASTQDKVISE  480
VYLGRQICNV VACEGPDRVE RHETLDQWRL RFGSAGFEPV HIGSNAFKQA SMLLDLFSGG  540
EGYRVEENNG CLMLGWHTRP LIATSAWRVG STGPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-6620456714378Protein SCARECROW
5b3h_A6e-6620456713377Protein SCARECROW
5b3h_D6e-6620456713377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021594609.10.0DELLA protein GAIP-B
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2C9UFS90.0A0A2C9UFS9_MANES; Uncharacterized protein
STRINGcassava4.1_033968m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein