PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0733s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 261aa    MW: 29327.7 Da    PI: 9.5733
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0733s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.33.1e-161051243
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                         +i n+s r+ t+ kR+ g++KK +ELS+LC+++++ ii+s+ 
  Kalax.0733s0002.1.p 10 FIANNSARKATYKKRKRGLIKKVNELSTLCGVDACAIIYSPY 51
                         799*************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-21160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.021149IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-23395IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-7323IPR002100Transcription factor, MADS-box
CDDcd002663.87E-32386No hitNo description
PfamPF003193.0E-171051IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MRRQKFKLAF IANNSARKAT YKKRKRGLIK KVNELSTLCG VDACAIIYSP YETHPVVWPS  60
SAIGVQRVLS QFMRMPEMEQ SKTKVNQETF LRHRIVKTKE QLKKQVKDNR EEEMTEVMFQ  120
CLTGKDMMNL NMTDLNDITW LVDHCLREIN KKCEKLKNSG GDAGTANVVG ADPILEEIKP  180
LILNVNPNFS TGFNPSVAAD GMQSSTWLAG GFVNNNGASS SYNSNQLQGR PGIANDIMQG  240
QPQFNMGGMW LNCPNYFYNM *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016464483.18e-72PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK36e-59AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A1S3ZJU32e-70A0A1S3ZJU3_TOBAC; agamous-like MADS-box protein AGL80
STRINGPOPTR_0005s00420.11e-70(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-61AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]