PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0726s0026.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 307aa    MW: 34437.9 Da    PI: 4.781
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0726s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.3e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++l+  +   G  +W+++++  g++R++k+c++rw +yl
  Kalax.0726s0026.1.p 14 KGPWTAEEDKKLIAFIITNGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
                         79********************************************97 PP
2Myb_DNA-binding52.31.3e-1671111547
                          -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           ++E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
  Kalax.0726s0026.1.p  71 NQDEEQLVIDLHARLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111
                          589***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-21562IPR009057Homeodomain-like
PROSITE profilePS5129414.574961IPR017930Myb domain
SuperFamilySSF466891.72E-2611108IPR009057Homeodomain-like
SMARTSM007172.5E-131363IPR001005SANT/Myb domain
PfamPF002491.6E-141461IPR001005SANT/Myb domain
CDDcd001679.84E-101661No hitNo description
PROSITE profilePS5129426.84262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-2463116IPR009057Homeodomain-like
SMARTSM007179.5E-1566114IPR001005SANT/Myb domain
CDDcd001671.85E-1171112No hitNo description
PfamPF002491.0E-1472111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTAE EDKKLIAFII TNGQCCWRAV PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL NQDEEQLVID LHARLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLLKMG  120
IDPVTHEPLK PKEDTIISNE DTPASSPQES DALNPSIDIA QPAEAAAPVT DKQPNEKMIS  180
ETADAGKLLN SDVIIEDPLS LIDCLWDDQE ASQIPGFVIE EHSRRLVDGD VMMHHSHDDL  240
QQLPSDQAAG GGRFLMSDLE LPDWEESCAW LLDCQDLSIH DYGFGCFSND FELSSFNSLE  300
VDNKQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298679.11e-107PREDICTED: protein ODORANT1
SwissprotQ50EX65e-91ODO1_PETHY; Protein ODORANT1
TrEMBLA0A166FXF81e-105A0A166FXF8_DAUCS; Uncharacterized protein
STRINGXP_004298679.11e-106(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.11e-89myb domain protein 85
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]