PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0720s0023.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ARR-B | ||||||||
Protein Properties | Length: 681aa MW: 74340.6 Da PI: 6.7147 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.3 | 8.2e-29 | 217 | 270 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl Kalax.0720s0023.1.p 217 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 270 79*******************.********************************8 PP | |||||||
2 | Response_reg | 74.1 | 5.6e-25 | 38 | 146 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl+vdD+p+ + +l+++l++ y ev+ + +e al ll+e++ +D+++ D+ mp+mdG++ll+ + +lp+i+++a ++++ + + Kalax.0720s0023.1.p 38 VLVVDDDPTCLAILERMLKSCLY-EVTKCNRAEIALSLLRENEngYDVVISDVHMPDMDGFKLLEYVGLKM-DLPVIMMSADDTKAVVMK 125 89*********************.***************888889**********************6544.8***************** PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ +++l + Kalax.0720s0023.1.p 126 GVTHGACDYLIKPVRMDALKN 146 ****************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 2.8E-170 | 10 | 669 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 9.39E-35 | 35 | 164 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 4.7E-42 | 35 | 175 | No hit | No description |
SMART | SM00448 | 8.6E-30 | 36 | 148 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 41.707 | 37 | 152 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 8.1E-23 | 38 | 146 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 6.68E-27 | 39 | 151 | No hit | No description |
PROSITE profile | PS51294 | 11.048 | 214 | 273 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.23E-20 | 214 | 274 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-30 | 216 | 275 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.7E-25 | 217 | 270 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.8E-8 | 219 | 269 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 681 aa Download sequence Send to blast |
MNLSSGGNRS MSTVASSCGG NWRPVDAVSD RFPAGLRVLV VDDDPTCLAI LERMLKSCLY 60 EVTKCNRAEI ALSLLRENEN GYDVVISDVH MPDMDGFKLL EYVGLKMDLP VIMMSADDTK 120 AVVMKGVTHG ACDYLIKPVR MDALKNIWQH VVRKKKHEWK ELEQSKSREE VENRQAKQAE 180 EADYSSSANE GSWRNSKKRK DEEEDLEDRE DTSTLKKPRV VWSVELHQQF VAAVNQLGID 240 KAVPKKILEL MNVPGLTREN VASHLQKYRL YLRRISGGVP QHPGVINNGF MGSQEGPFGA 300 MSSLTGLDLQ AIAASGHLPG QSLATLQSAI FNKGNTLSGM TMAGMDQRNI FSFENPKIRF 360 GEGQQLQQMT NGKQINLLHG IPTNVESKQL TSLHHSESSI GSVGTQPNSH GNSSGSLMMQ 420 ATQPQSRAQL LNEAVSSQFS KAPPSIGLVN VSNGAGVGAV QMRNNNPVHD NRGTGFNLVS 480 QPSPITSFPI NKSELAGSGF PLASAPGVMA AKGMLHDEIS SRMKGSVGYT PNYDMFSEIH 540 QPKFHPWELQ GVGLQFDGSH RPNTLQGNFD ILPSVKIQQQ DFSSVGTALI TGSAPAVYSS 600 GERTQHYRTL NTSQQIPGHN SVKIKGERIG DFDSQNNLIP QHYGQEDLMS ALLKQHPGSN 660 GADDDEFDFD GYPSFGNIPV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-22 | 216 | 276 | 4 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002519174.1 | 0.0 | two-component response regulator ARR2 isoform X1 | ||||
Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
TrEMBL | B9RZK5 | 0.0 | B9RZK5_RICCO; Two-component response regulator | ||||
STRING | XP_002519174.1 | 0.0 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16857.2 | 1e-172 | response regulator 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0720s0023.1.p |