PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0703s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 369aa    MW: 40978.8 Da    PI: 6.2431
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0703s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-161462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd +l+ +++q G+g +W + ++++g++R++k+c++rw++yl
  Kalax.0703s0004.1.p 14 KGPWSPEEDARLKSYIEQNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                         79*********************************************97 PP
2Myb_DNA-binding37.45.8e-1269111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Kalax.0703s0004.1.p  69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                          569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.968962IPR017930Myb domain
SuperFamilySSF466891.09E-2511109IPR009057Homeodomain-like
SMARTSM007171.6E-111364IPR001005SANT/Myb domain
PfamPF002496.6E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-231569IPR009057Homeodomain-like
CDDcd001671.35E-81662No hitNo description
PROSITE profilePS5129421.66663117IPR017930Myb domain
SMARTSM007174.8E-1167115IPR001005SANT/Myb domain
PfamPF002491.4E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2370117IPR009057Homeodomain-like
CDDcd001673.07E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDARLKSYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKEHNYQAR RIDGLKQEIS LMMTMNKEAV DNSMVLSSNC NNTETPYWPE LPVLAPIPYS  180
NQDARSLNDH ASIRRLLIKL GGRFSSDDES IHQGGNMEQL LPINVMSSAP DVTIYPQEGA  240
PSYLAATSSP GALNNPTYSF EHPQFMMEGS GVNLLQGHDQ HQPNHDIGQL VGFNSSSHGM  300
VDGLEFLYGD ELYNNRNGGE GMTYGDMLAR SGSYPVYDTQ PVADSTNSNY DQQGSSFDEL  360
RYSGGVAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019071830.11e-131PREDICTED: transcription factor RAX3
TrEMBLA0A438F8Q31e-130A0A438F8Q3_VITVI; Transcription factor RAX3
TrEMBLE0CNX01e-130E0CNX0_VITVI; Uncharacterized protein
STRINGVIT_18s0001g08470.t011e-131(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-81myb domain protein 84