PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0696s0013.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 114aa MW: 13176.3 Da PI: 11.5611

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0696s0013.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.9	4.8e-08	5	33	20	48
TTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqkyl 48 G +W+ +++ g++R++k+c++rw +yl Kalax.0696s0013.1.p 5 GQCCWRVVSKLAGLRRCGKSCRLRWTNYL 33 6779***********************97 PP
2	Myb_DNA-binding	46.2	1e-14	43	83	5	47
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++E++ll+d +++lG++ W++Ia+t++ gRt++++k++ +++ Kalax.0696s0013.1.p 43 NQDEEQLLIDRHARLGNR-WSKIAATLP-GRTDNEIKNHRNTH 83 589*************.*****.********8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	7.041	1	33	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-11	5	40	IPR009057	Homeodomain-like
Pfam	PF00249	2.3E-6	5	33	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.84E-19	19	92	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.714	34	88	IPR017930	Myb domain
SMART	SM00717	5.5E-10	38	86	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-20	41	87	IPR009057	Homeodomain-like
CDD	cd00167	1.05E-7	43	79	No hit	No description
Pfam	PF00249	2.2E-11	44	82	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MLANGQCCWR VVSKLAGLRR CGKSCRLRWT NYLRPDLNRG LLNQDEEQLL IDRHARLGNR 60 WSKIAATLPG RTDNEIKNHR NTHIKKNSSK WGLTALPRMS PSLKPKRRDN YLK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-18	5	86	26	106	B-MYB
1gv2_A	2e-18	9	86	27	103	MYB PROTO-ONCOGENE PROTEIN
1mse_C	2e-18	9	86	27	103	C-Myb DNA-Binding Domain
1msf_C	2e-18	9	86	27	103	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269\|PubMed:15805488}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009370487.1	1e-48	PREDICTED: protein ODORANT1-like
Refseq	XP_015877891.1	2e-49	protein ODORANT1-like
Refseq	XP_021286912.1	7e-49	protein ODORANT1-like
Swissprot	Q50EX6	2e-46	ODO1_PETHY; Protein ODORANT1
TrEMBL	A0A1D1XSV8	7e-47	A0A1D1XSV8_9ARAE; Protein ODORANT1 (Fragment)
STRING	XP_009370487.1	4e-48	(Pyrus x bretschneideri)
STRING	XP_009372900.1	4e-48	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22680.1	5e-50	myb domain protein 85

Link Out ? help Back to Top
Phytozome	Kalax.0696s0013.1.p

Publications ? help Back to Top
Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC ODORANT1 regulates fragrance biosynthesis in petunia flowers. Plant Cell, 2005. 17(5): p. 1612-24 [PMID:15805488]