PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0685s0018.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 252aa MW: 28290.1 Da PI: 9.5312 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 52.2 | 1.1e-16 | 103 | 157 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Le+ F+ + ++ ++++e LA++l+L rqV vWFqNrRa+ k Kalax.0685s0018.1.p 103 RKKLRLNKEQSALLEDSFNLQTTLHQKQKEALARQLNLLPRQVEVWFQNRRARTK 157 5777899**********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 106.8 | 1.7e-34 | 103 | 192 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq++lLE+sF+ +++L++++K++lar+L+l prqv+vWFqnrRARtk+kq+E+d e+Lkr++++l++enerL+ke ++L+++ Kalax.0685s0018.1.p 103 RKKLRLNKEQSALLEDSFNLQTTLHQKQKEALARQLNLLPRQVEVWFQNRRARTKLKQTEVDREFLKRCCERLTDENERLRKELRALKQA 192 69*************************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.18E-16 | 93 | 160 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.001 | 99 | 159 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.3E-13 | 101 | 163 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-15 | 103 | 157 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.9E-14 | 103 | 157 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.98E-13 | 103 | 160 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 134 | 157 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 5.8E-7 | 159 | 191 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 5.6E-14 | 159 | 202 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 252 aa Download sequence Send to blast |
MSPPPPPPLD GRGLLLGLAL RTAPVPPLGL SLSSTHDHHI ISYDHQPSLT LSLLFPANKL 60 DDYDDDQISS LSNSVNSVKR ERAYGVANNI NDAYEDVSNN IIRKKLRLNK EQSALLEDSF 120 NLQTTLHQKQ KEALARQLNL LPRQVEVWFQ NRRARTKLKQ TEVDREFLKR CCERLTDENE 180 RLRKELRALK QASQHQPFLP TARLSMCPSC QSLTDLRNNP ATTTSAILTS SRLPKNTCFS 240 TTPSSPSLLS N* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 151 | 159 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009138531.1 | 6e-55 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Refseq | XP_013593591.1 | 7e-55 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Refseq | XP_013692779.1 | 6e-55 | homeobox-leucine zipper protein HAT22-like | ||||
Refseq | XP_013707495.1 | 7e-55 | homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 9e-55 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A397L1K1 | 1e-53 | A0A397L1K1_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DMW6 | 1e-53 | M4DMW6_BRARP; Uncharacterized protein | ||||
STRING | Bra017853.1-P | 2e-54 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37790.1 | 4e-56 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0685s0018.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|