PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0682s0009.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 311aa    MW: 36395.6 Da    PI: 10.6254
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0682s0009.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.3e-15511331199
                          HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          l+++ l++pkkfa ++  k     t++l+ ++   W+vk+    + + ++l++GW +F  ++ L+e Df+vF+++g+s+f   v++f++
  Kalax.0682s0009.2.p  51 LSRSELRVPKKFAMKFPVK--LWETIKLRGPTRDIWSVKV--VETEEDVLLREGWPRFLYDHLLNEYDFLVFHYTGSSSF--DVSIFDR 133
                          567889*******999655..4559***************..99999*****************************9999..9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-2037136IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-1939136IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.25241134IPR003340B3 DNA binding domain
CDDcd100179.10E-1343132No hitNo description
SMARTSM010193.1E-1045134IPR003340B3 DNA binding domain
PfamPF023621.6E-1251134IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-6150211IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.88E-7151211IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MLQTLSFVKG FQRVKMAEMD EREEIPRVME KQIYWNQFES TKHHFFETVK LSRSELRVPK  60
KFAMKFPVKL WETIKLRGPT RDIWSVKVVE TEEDVLLREG WPRFLYDHLL NEYDFLVFHY  120
TGSSSFDVSI FDRNGCMKDL RMLQDQFEIK PHFFKVINKE FRSKLLIPKK LSVRFVEKMG  180
NIIRLKGPSG NVWKVGAKTA GGDVILGRGC EKESSHFVKP AARIADLRGE RARKMGKLPA  240
GFTGGGDHER EETPISKMQC KVNPKMKGKM RIQEKNDTPA HKTMKLPKEL TLEQLQDLKI  300
KHKQRKQQRR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-13B3 family protein