PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0682s0009.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 346aa    MW: 40405.9 Da    PI: 10.3726
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0682s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.6e-15511331199
                          HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          l+++ l++pkkfa ++  k     t++l+ ++   W+vk+    + + ++l++GW +F  ++ L+e Df+vF+++g+s+f   v++f++
  Kalax.0682s0009.1.p  51 LSRSELRVPKKFAMKFPVK--LWETIKLRGPTRDIWSVKV--VETEEDVLLREGWPRFLYDHLLNEYDFLVFHYTGSSSF--DVSIFDR 133
                          567889*******999655..4559***************..99999*****************************9999..9999998 PP
2B355.51e-17153242199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkv   +  ++s+ l +pkk   ++ +k   +  ++l+ +sg++W+v    +  +g ++l++GW eFv+++ L+e  fvvF+++g+s+f
  Kalax.0682s0009.1.p 153 FFKVI--NKEFRSK-LLIPKKLSVRFVEK--MGNIIRLKGPSGNVWKVGA--KTAGGDVILGRGWAEFVSDHSLDESNFVVFHYTGDSSF 235
                          56666..5566665.89999987777433..4558***************..999999*****************************999 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                             v +f++
  Kalax.0682s0009.1.p 236 --SVLIFDS 242
                          ..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-2037136IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-1939136IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.25241134IPR003340B3 DNA binding domain
CDDcd100172.03E-1243132No hitNo description
SMARTSM010193.1E-1045134IPR003340B3 DNA binding domain
PfamPF023621.9E-1251133IPR003340B3 DNA binding domain
SuperFamilySSF1019367.06E-23150248IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.747150243IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-21150244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.37E-14151241No hitNo description
PfamPF023624.8E-15153242IPR003340B3 DNA binding domain
SMARTSM010192.4E-11153243IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MLQTLSFVKG FQRVKMAEMD EREEIPRVME KQIYWNQFES TKHHFFETVK LSRSELRVPK  60
KFAMKFPVKL WETIKLRGPT RDIWSVKVVE TEEDVLLREG WPRFLYDHLL NEYDFLVFHY  120
TGSSSFDVSI FDRNGCMKDL RMLQDQFEIK PHFFKVINKE FRSKLLIPKK LSVRFVEKMG  180
NIIRLKGPSG NVWKVGAKTA GGDVILGRGW AEFVSDHSLD ESNFVVFHYT GDSSFSVLIF  240
DSSRCEKESS HFVKPAARIA DLRGERARKM GKLPAGFTGG GDHEREETPI SKMQCKVNPK  300
MKGKMRIQEK NDTPAHKTMK LPKELTLEQL QDLKIKHKQR KQQRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-18B3 family protein