PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0681s0017.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 601aa    MW: 65552 Da    PI: 4.8207
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0681s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS344.71.5e-1052356004374
                 GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                          ++l+cA++v+s + e+a ++L++l + +s++gdp++R++++f+eAL +r ++      +  +  ++s ++s+e + ++k++++++P+ kf
  Kalax.0681s0017.1.p 235 AVLDCARVVDS-EPERAVNTLTQLLKSVSETGDPIERVTFHFAEALCNRASH------RPGNLLTASGTTSEEFTVSYKALNDACPYSKF 317
                          5789***8887.7889999********************************9......444555555555999***************** PP

                 GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                          +hltaNqaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+R++g+p +++i g+  p+ g     +l++tg+rL++fA+ l+++fef++
  Kalax.0681s0017.1.p 318 AHLTANQAILEATEKAQKIHIVDFGIVQGVQWAALLQALATRTNGKPsRIKISGIPTPALGpsPVAALSATGNRLSEFAKLLDLNFEFEP 407
                          *******************************************887779*********99999999************************ PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                           v   +++l+ ++++v+p+E++aVn++lql++llde+    +   + L+l +slsP +v++ e ea +n+ +F+er+ +al +y+alf+s
  Kalax.0681s0017.1.p 408 -VLAPMSELSESSFKVEPDESVAVNFMLQLYNLLDETPMAVE---TALRLARSLSPSIVTLGEYEARLNQVPFVERVNNALTHYTALFES 493
                          .7999*****************************99888888...9******************************************** PP

                 GRAS 271 leaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgsl 358
                          le ++ r+s +ri +E+ llg++i  ++  e+   +rer+e    W+  +e+aGF pv+ls++a +qak ll +++ +  y++ e+  ++
  Kalax.0681s0017.1.p 494 LEPNFKRDSADRIQLEKSLLGQRIAGMIGPEEPGvKRERMEDRDGWKLLMESAGFVPVKLSHYAISQAKILLWNYNyNSQYSIVESPPAF 583
                          ******************************999889****************************************9999******9999 PP

                 GRAS 359 v.lgWkdrpLvsvSaWr 374
                          + l W++ p++svS+Wr
  Kalax.0681s0017.1.p 584 LsLAWRELPVLSVSSWR 600
                          99**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.348206578IPR005202Transcription factor GRAS
PfamPF035145.2E-103235600IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MAYLCGDSGN LMAIAQQIQQ KEQQDQHNLH PIHHQQDHNH YQQQPQPQQL QLVGVNPFAM  60
ANTWTASASQ LGYGLAGSGF PDQFPVAGAD AAGEGMFPFS NPMEFKFTEF DSADWIMEGL  120
IGSGEPPTAG YETWQSQPDF NHLYAADPFA APPPGDLTPL IFSAPSKTDG SVQPQEPICA  180
PLPAPPSPPR PPHVDKEVTV APPPPAPKSQ KTVISRSNTG PSDAEQSTPP PLLIAVLDCA  240
RVVDSEPERA VNTLTQLLKS VSETGDPIER VTFHFAEALC NRASHRPGNL LTASGTTSEE  300
FTVSYKALND ACPYSKFAHL TANQAILEAT EKAQKIHIVD FGIVQGVQWA ALLQALATRT  360
NGKPSRIKIS GIPTPALGPS PVAALSATGN RLSEFAKLLD LNFEFEPVLA PMSELSESSF  420
KVEPDESVAV NFMLQLYNLL DETPMAVETA LRLARSLSPS IVTLGEYEAR LNQVPFVERV  480
NNALTHYTAL FESLEPNFKR DSADRIQLEK SLLGQRIAGM IGPEEPGVKR ERMEDRDGWK  540
LLMESAGFVP VKLSHYAISQ AKILLWNYNY NSQYSIVESP PAFLSLAWRE LPVLSVSSWR  600
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1432316003375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889931.10.0SCARECROW-LIKE protein 7 isoform X2
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A438CHG10.0A0A438CHG1_VITVI; Scarecrow-like protein 4
STRINGEOX911130.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-174GRAS family protein