PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0658s0004.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

LSD

Protein Properties

Length: 400aa MW: 42591.7 Da PI: 4.2113

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0658s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	37	5.7e-12	303	327	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYP GA++VRC +C+tV Kalax.0658s0004.1.p 303 CGSCRSLLSYPKGAKYVRCLCCQTV 327 ************************9 PP
2	zf-LSD1	28.3	2.8e-09	341	365	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg C +lL+Y +G p+VRC++C+++ Kalax.0658s0004.1.p 341 CGRCAVLLMYYYGCPAVRCSNCQFI 365 ***********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.1E-13	300	330	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.0E-9	303	327	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	3.3E-5	338	367	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.0E-6	341	365	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MSGVKEEEDE DVKEVKQEEV PRPPVPFLAG LIKQEAMECQ PVRSRFRNSG EVGGADGSFC 60 PAASVGDFLG ENRGVDPMEM KMGDELSIPE EGDDDAGLPP GWGATRTKVE GIFLPPESIE 120 ETDGMKREIE VEELKPSFSS EVNDKGSRLA GGEAADTEDG GSVVSLGEEK VGGVSGAEDE 180 DGPPPRWEAA VTNDLGPGSS VETIPLEIKM EEVQPTEGKL GVADAEKDDD DDDGPPPGWE 240 AAATNNGGAE KEPLVKQESC KLEKGKEKEC PPPCREPMAA PAPRPPLPSK PLDATSEMGQ 300 VVCGSCRSLL SYPKGAKYVR CLCCQTVSFV LEAHQVGQVY CGRCAVLLMY YYGCPAVRCS 360 NCQFITQIGP HNRRPPLSEQ GGTLQSQLAL LRPTKSVAQ*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MSGVKEEEDE DVKEVKQEEV PRPPVPFLAG LIKQEAMECQ PVRSRFRNSG EVGGADGSFC  60
PAASVGDFLG ENRGVDPMEM KMGDELSIPE EGDDDAGLPP GWGATRTKVE GIFLPPESIE  120
ETDGMKREIE VEELKPSFSS EVNDKGSRLA GGEAADTEDG GSVVSLGEEK VGGVSGAEDE  180
DGPPPRWEAA VTNDLGPGSS VETIPLEIKM EEVQPTEGKL GVADAEKDDD DDDGPPPGWE  240
AAATNNGGAE KEPLVKQESC KLEKGKEKEC PPPCREPMAA PAPRPPLPSK PLDATSEMGQ  300
VVCGSCRSLL SYPKGAKYVR CLCCQTVSFV LEAHQVGQVY CGRCAVLLMY YYGCPAVRCS  360
NCQFITQIGP HNRRPPLSEQ GGTLQSQLAL LRPTKSVAQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-34	lsd one like 2

Link Out ? help Back to Top
Phytozome	Kalax.0658s0004.1.p