PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0655s0019.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 222aa    MW: 24886.5 Da    PI: 4.8015
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0655s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.4e-105396755
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           Er+RR+r+ +++  Lr+l+P+      + ++Ka+i   Av YI +Lq
  Kalax.0655s0019.1.p 53 LTERNRRQRLSERLLVLRSLVPNI-----TNMNKATIIVDAVSYIEELQ 96
                         57*********************6.....58*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.8E-1546113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.3734695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1547111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.20E-104897No hitNo description
SMARTSM003532.8E-1052101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-75396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGMCGLAGQM KHKGVILYEP VKIGESSNEG KSASNEAVGE NGEVRRFKSK NLLTERNRRQ  60
RLSERLLVLR SLVPNITNMN KATIIVDAVS YIEELQRCVE ELTNQLQEME AKVCSDDEER  120
EFQEGETSLM QEIIQTPIQA EVDLTVINHS KLWMKLVFTN RRGGFTQLME ALNYLGLEPT  180
NVSLTTSGGA VLVSLCLEGI YGQDLEVNKI RELLQDIIRN I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021809344.13e-53transcription factor DYT1-like
TrEMBLA0A2N9GEL91e-52A0A2N9GEL9_FAGSY; Uncharacterized protein
STRINGXP_008225011.12e-52(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.18e-27bHLH family protein