PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0652s0003.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 333aa    MW: 37005.4 Da    PI: 5.7444
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0652s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rgrWT+eEde l ++++  G g+W+++++  g+ R++k+c++rw +yl
  Kalax.0652s0003.1.p 14 RGRWTAEEDEVLMKYIQVNGEGSWRSVPKNAGLQRCGKSCRLRWINYL 61
                         8*********************************************97 PP
2Myb_DNA-binding51.72.1e-1667112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ T++E+ l++ +++ lG++ W++Ia +++ gRt++++k++w+++l
  Kalax.0652s0003.1.p  67 RGNITPQEENLIISLHASLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112
                          7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-24564IPR009057Homeodomain-like
PROSITE profilePS5129418.409961IPR017930Myb domain
SuperFamilySSF466894.39E-3011108IPR009057Homeodomain-like
SMARTSM007171.7E-111363IPR001005SANT/Myb domain
PfamPF002499.3E-151461IPR001005SANT/Myb domain
CDDcd001671.46E-81661No hitNo description
PROSITE profilePS5129426.82462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2665116IPR009057Homeodomain-like
SMARTSM007179.4E-1666114IPR001005SANT/Myb domain
PfamPF002496.5E-1567112IPR001005SANT/Myb domain
CDDcd001671.24E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGRTPCCEKV GLKRGRWTAE EDEVLMKYIQ VNGEGSWRSV PKNAGLQRCG KSCRLRWINY  60
LRPDLKRGNI TPQEENLIIS LHASLGNRWS LIAGHLPGRT DNEIKNYWNS HLNRKLHGFT  120
ATPEKNESFE IFARNIDARG DKKSSSGSGM TKKDTGLQRS ASAENHEPAA RAKSMQSITG  180
QLEPLDDVGR GELIRVNSKT CISEPKPNDF IGKPMEAPCS NEESIGSVML CPETQGAWEG  240
LEYETKGAGG LVEQGGLDDI IAPLQVTSST HRRENGGGWG YPTIGDSREW CTGAPSINQE  300
WVDWQYIDGL KKMDSEEDGE MLSWFWNDNY GI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-24121162105MYB PROTO-ONCOGENE PROTEIN
1h8a_C5e-241211625128MYB TRANSFORMING PROTEIN
1mse_C4e-24121162105C-Myb DNA-Binding Domain
1msf_C4e-24121162105C-Myb DNA-Binding Domain
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015574695.14e-74transcription factor MYB111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-72myb domain protein 12