PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0639s0011.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GATA

Protein Properties

Length: 280aa MW: 31744.7 Da PI: 7.4826

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0639s0011.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	55.6	7e-18	193	227	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C + kTp+WR gp g+ktLCnaCG++y++ +l Kalax.0639s0011.1.p 193 CSHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 227 *******************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	6.4E-18	187	237	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.438	187	223	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.14E-14	191	251	No hit	No description
Gene3D	G3DSA:3.30.50.10	4.1E-14	191	225	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	5.91E-14	193	239	No hit	No description
Pfam	PF00320	8.4E-16	193	227	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	193	218	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MDEFFRVDDL LNFSNDDHVF TTDHSDHHHH HHLHQNQQLN SSSEHMVDYQ LKNYYDRNNN 60 LPRCNNSSFS SVSGPAAAAF GAQHFSYDFT DQLCVPNDDV AELEWLSNFV DDSFNDFNSN 120 ALTGTLMSQS HTSIPSAARS KRSRQRTWKA STSLISSSTA PQIDRSRTKR QETNSMSEFV 180 DDSSSSSGGV RRCSHCASEK TPQWRTGPMG PKTLCNACGV RYKSGRLVPE YRPAASPTFV 240 LTQHSNSHRK VMELRRQKEV TIKQQQGHVY RHSHDFEVC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	145	KRSRQR
2	164	169	RSRTKR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269\|PubMed:12139008}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002277959.1	2e-79	PREDICTED: GATA transcription factor 4
Swissprot	O49741	1e-67	GATA2_ARATH; GATA transcription factor 2
TrEMBL	A0A438BWC0	2e-78	A0A438BWC0_VITVI; GATA transcription factor
STRING	VIT_15s0021g02510.t01	8e-79	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45050.1	4e-64	GATA transcription factor 2

Link Out ? help Back to Top
Phytozome	Kalax.0639s0011.1.p

Publications ? help Back to Top
Jiang K,Yung V,Chiba T,Feldman LJ Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain. Planta, 2018. 247(4): p. 831-843 [PMID:29249045]