PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0622s0034.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 456aa    MW: 51123.6 Da    PI: 9.0427
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0622s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.2e-18122171155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta +Aa+a+++a++k++g
  Kalax.0622s0034.1.p 122 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHDAARAYDRAALKFRG 171
                          78*******************......55************************997 PP
2AP230.68.2e-10214264155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV+ +k   rW+A+   +     +k+++lg f  + eAa+a++ a+ + +g
  Kalax.0622s0034.1.p 214 SKYRGVTLHK-CWRWEARMGQF--L-GKKYVYLGLFNCEVEAARAYDSAAIECNG 264
                          89********.579****5553..1.26**********99**********98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.15E-16122179IPR016177DNA-binding domain
PfamPF008471.9E-9122171IPR001471AP2/ERF domain
CDDcd000181.98E-13123181No hitNo description
Gene3DG3DSA:3.30.730.101.8E-17123179IPR001471AP2/ERF domain
SMARTSM003802.3E-32123185IPR001471AP2/ERF domain
PROSITE profilePS5103217.583123179IPR001471AP2/ERF domain
PfamPF008471.1E-6214264IPR001471AP2/ERF domain
CDDcd000189.81E-22214272No hitNo description
SuperFamilySSF541713.2E-14214272IPR016177DNA-binding domain
PROSITE profilePS5103213.749215272IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-14215272IPR001471AP2/ERF domain
SMARTSM003801.0E-25215278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MMLDLNLMVA EEEVVHMAAE KFSKSCGTSN SSIANVTEAD EDSCSRAGET PYFNLSVGRE  60
KMNTIELFPM RMAVGDFGDE GLKKKQMDIS FNQNGSSKVK EVQQLQPLVA RKSRRGPRSR  120
SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHDAAR AYDRAALKFR GVEADINFNP  180
VDYDEDMKKM VNLTKEQFVH ILRRQSTGFA RGSSKYRGVT LHKCWRWEAR MGQFLGKKYV  240
YLGLFNCEVE AARAYDSAAI ECNGREAVTN FAPITYGGGT TFERNSLGCD QHLNLNLSIS  300
LPSSGYEPTE KQVSVHPHPK YIYHPYSLLD ARKPNVDEPS SGGHSRLSLY PQLLFNAEVQ  360
APNKRNEQNS HFQSFPNWTW KLNGQASPAP MRLLSSAASS GFSSPALSVP TAAIHLTKPL  420
HHTAHTHYFI QPTATTMGVT PGMFHYQDQI QLPPR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028061878.11e-128ethylene-responsive transcription factor RAP2-7-like
TrEMBLA0A0A0KCQ81e-121A0A0A0KCQ8_CUCSA; Uncharacterized protein
STRINGXP_004148250.11e-122(Cucumis sativus)
STRINGXP_004164686.11e-122(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-85related to AP2.7