PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0608s0024.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WRKY

Protein Properties

Length: 284aa MW: 31233.9 Da PI: 6.1772

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0608s0024.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.2	2.3e-30	82	139	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp++++itY+++Hnh+ Kalax.0608s0024.1.p 82 DCWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSHVDPTMLIITYSSDHNHS 139 99**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.9E-31	76	141	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-25	79	141	IPR003657	WRKY domain
SMART	SM00774	1.4E-34	80	140	IPR003657	WRKY domain
PROSITE profile	PS50811	31.364	82	141	IPR003657	WRKY domain
Pfam	PF03106	2.1E-25	82	138	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MESRLLSGNH NHNSKNSIGF DQRRQRCYGE HQSPEILRVS KIGATMSKRS KRAATKRVVS 60 VPIKSVETAR GNKSGDGAPP GDCWAWRKYG QKPIKGSPYP RGYYRCSSSK GCPARKQVER 120 SHVDPTMLII TYSSDHNHSL PAAAASRNQP TNNGSASCET IDKAAVSNNS DSKSAESGEA 180 EQEQKVVDDR DHEQSMMLAM EDDFGWLSGL ESAATPSFMM MESSMFGDDL LLPLMGVEEE 240 EELFADLGEL PECSSVFRRK AAAEVEERMP CADAKWFETT SLL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-20	53	142	3	80	Disease resistance protein RRS1
5w3x_D	2e-20	53	142	3	80	Disease resistance protein RRS1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024988156.1	5e-66	probable WRKY transcription factor 65 isoform X1
TrEMBL	A0A103XTV2	1e-64	A0A103XTV2_CYNCS; DNA-binding WRKY
STRING	XP_006467614.1	1e-63	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	1e-55	WRKY DNA-binding protein 65

Link Out ? help Back to Top
Phytozome	Kalax.0608s0024.1.p