PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0595s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 320aa    MW: 34925.9 Da    PI: 4.8647
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0595s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.49.9e-19240273134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs+C++ kTp+WR gp+g ktLCnaCG+++++ +
  Kalax.0595s0011.1.p 240 CSHCQVQKTPQWRAGPEGAKTLCNACGVRFKSGR 273
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.1E-7429316IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.334234270IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-16234288IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.09E-14235297No hitNo description
Gene3DG3DSA:3.30.50.103.6E-15237271IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.27E-14239288No hitNo description
PfamPF003201.2E-16240273IPR000679Zinc finger, GATA-type
PROSITE patternPS003440240265IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEYCIEARAL KPSLRREIDV RPNQSQAVAA VDEFVYETEV HGGGFVEDFL IDDLLDFPEK  60
EVEDGDEEEE EEKDSLSDCS AELETDENGY STVTGDFLSL PDDASGLAVP QDDLADLEWV  120
SRFVDDTMPE FPPLYPTKSG VSGRKPSVSS SLPVQLNQDI HIKPLIIPAK PRTKRQRIGR  180
VWSLNSSTAS ESSTTTSSSL SSPSSIISSP VQFGFSGPLA KKQKTKPDPA QPADPTGRRC  240
SHCQVQKTPQ WRAGPEGAKT LCNACGVRFK SGRLYPEYRP ACSPTFRGDV HSNSHRKVLE  300
MRKKKEAGAA GSGLAVQSY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236855.13e-77PREDICTED: GATA transcription factor 5-like
RefseqXP_008236856.13e-77PREDICTED: GATA transcription factor 5-like
STRINGXP_008236855.11e-76(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.13e-50GATA transcription factor 7