PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0588s0018.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 250aa MW: 29116.4 Da PI: 8.6506 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.3 | 1.4e-18 | 32 | 118 | 7 | 99 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + ++++++ l++pkkf ++ +k + t++l+ ++g W+vk+ k+ + ++l+kGW +Fv ++ L+e D +vF+++g+s+f v++ Kalax.0588s0018.1.p 32 QIMANSNSELRVPKKFGMKFPMK--LGETIKLRGPTGDIWRVKV--VKTEEDVLLRKGWPRFVYDHLLNEYDLLVFRYTGSSSF--DVSI 115 556788899********999877..7779***************..**********************************9999..9999 PP E-S CS B3 97 frk 99 f++ Kalax.0588s0018.1.p 116 FDR 118 998 PP | |||||||
2 | B3 | 54.8 | 1.7e-17 | 138 | 226 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffkv+ + ++s+ l +pkk ++g +++ + t++l+ +sg +W+v ++ ++ ++l+ GW +Fv+++ L+e Df++F+++g+s+f Kalax.0588s0018.1.p 138 FFKVM--NQEFRSK-LLIPKKL--RIGFVEKMGNTIRLKGPSGYVWKVGA--ERAGEDVILGIGWTQFVSDHTLDESDFLIFHYTGDSSF 220 78888..7777776.999***8..5777777888****************..**********************************9999 PP ..EEEEE- CS B3 91 elvvkvfr 98 v +f+ Kalax.0588s0018.1.p 221 --SVLIFD 226 ..888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.3E-24 | 22 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.8E-23 | 23 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.648 | 26 | 119 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.90E-17 | 28 | 117 | No hit | No description |
SMART | SM01019 | 9.1E-14 | 30 | 119 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.9E-16 | 32 | 119 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.1E-20 | 134 | 228 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.014 | 135 | 228 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.83E-22 | 135 | 233 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.31E-13 | 136 | 226 | No hit | No description |
SMART | SM01019 | 4.4E-9 | 138 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-14 | 138 | 226 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MAEMDEREET SRAMEEQIYW NQFESTKHHF FQIMANSNSE LRVPKKFGMK FPMKLGETIK 60 LRGPTGDIWR VKVVKTEEDV LLRKGWPRFV YDHLLNEYDL LVFRYTGSSS FDVSIFDRNA 120 CVKDLRMLQD RFESKPHFFK VMNQEFRSKL LIPKKLRIGF VEKMGNTIRL KGPSGYVWKV 180 GAERAGEDVI LGIGWTQFVS DHTLDESDFL IFHYTGDSSF SVLIFDLSRC EKESSHFVKP 240 AARSTDLRG* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-19 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0588s0018.1.p |