PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0578s0005.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 761aa    MW: 86384.1 Da    PI: 7.0565
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0578s0005.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.43.3e-2059154190
                 FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek...dgkwevtklele 84 
                          +fY+++Ak++GFs+r+++++ +    + it+r+f+C + g+++ + ++  + k +r+r+++r+gC+a +++ k+      +w++t +++ 
  Kalax.0578s0005.2.p  59 EFYCSFAKQCGFSIRRHRTRGReGVGRGITRRDFTCHRGGFPQLKPSDdgKLKLQRNRKSSRCGCQAYMRIVKRAdydIPEWRITAFSNV 148
                          6***************999877355667**************99988866778899**************99887665679********* PP

                 FAR1  85 HnHela 90 
                          HnHel 
  Kalax.0578s0005.2.p 149 HNHELL 154
                          ****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-1759154IPR004330FAR1 DNA binding domain
PfamPF105512.2E-22276369IPR018289MULE transposase domain
PROSITE profilePS5096610.633553589IPR007527Zinc finger, SWIM-type
PfamPF044341.9E-9553587IPR007527Zinc finger, SWIM-type
SMARTSM005754.7E-6564591IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MSELASAVKE ASENATGSSP DDIGTIEEMP EDTILSRQTS VSLVPCIGQR FVSQDAAYEF  60
YCSFAKQCGF SIRRHRTRGR EGVGRGITRR DFTCHRGGFP QLKPSDDGKL KLQRNRKSSR  120
CGCQAYMRIV KRADYDIPEW RITAFSNVHN HELLKTTEVQ LLPAYSTISP DDKSRICMFS  180
KAGMSVRQML RLLELEKGVK LGSLPFTEVD VRNLLQSFRS VDGDNDAIDL LTICKNRKDK  240
EHDFKYDFKM DANNRLEHIA WSYPSCIQSY ETFGDCVIFD TTHRLDAYDM LLGLWVGVDN  300
HGMSCLFGCV LLRDENVQSF AWALKSFSGF MNNKSPQTLL TDENMWLKDA VSVEMPQTKH  360
AFCIWHITAK FSDWFSGMLG SLYDKWKADF QLLYNLQCVE DFEVGWLDMV NTYGLHGNKH  420
ISSLYALRSF WALPYLRGYF FAGMTKAFHS ESINAYTQRF LSVQSKLVNY VDQVVAIANY  480
KDQIGVKHKM QQKIQKFSLK TGSPIEAHAA SVLTPYAFNI LQEELVLAPQ YASLMVDENY  540
FIVRHHTKLD GGYKVLWSPN DEFISCSCQH FEFSGILCRH VLRVLSTNNC FHIQNQYLPA  600
RWREEPSARS FHQSSSGSDE KACKVQLLKS MVSTLVAQSA ETEERLDTAC NQVALLLSRI  660
KGFTGPSVQD DNPIAYPSPS ASLMIPEVED SDSIVQSYSS GPPQDSYSLG KLKERRPRDN  720
MDAYKKRRRC SVPCWGQFEH NAAECQMMSD DLSGDGMGFL *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028058977.10.0protein FAR1-RELATED SEQUENCE 11-like
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLF6HZ840.0F6HZ84_VITVI; Uncharacterized protein
STRINGVIT_07s0005g01120.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]