PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0571s0018.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 321aa MW: 35097.4 Da PI: 7.3405 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.9 | 3.5e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l ++k +G g+W++ ++ g+ R++k+c++rw +yl Kalax.0571s0018.1.p 14 KGAWTKEEDDRLTAYIKAHGDGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.2 | 3.2e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T +Edel+++ + lG++ W++Ia++++ gRt++++k++w+++ Kalax.0571s0018.1.p 67 RGNFTHDEDELIIHFHSILGNK-WSLIAAKLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.143 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.92E-28 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.43E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.379 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.68E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDDRLTAYIK AHGDGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDVKRGNF THDEDELIIH FHSILGNKWS LIAAKLPGRT DNEIKNYWNT HIKRKLLSRG 120 IDPATHQLIT RTKAPTTTSS AVDDVVLDED HHLNNQTTTT STTISFATVA NMMVGNNSAT 180 VENETAAASS ISLFAGGYID GIDNNVRHHK GFIPRTNRIE MEQHRQEGLA VAADGELSLE 240 LKISPPQQKL VSKERGLVEL DYCTSRLGLG LPTINGQDCC SCSGDEYYFS SGSGCAVSGF 300 DFLGLQGGVV GGDHGHQKQC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-28 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX661266 | 1e-63 | JX661266.1 Mimulus aurantiacus MaMYB3 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003607200.1 | 5e-94 | myb-related protein 308 | ||||
TrEMBL | B7FIY9 | 1e-92 | B7FIY9_MEDTR; Uncharacterized protein | ||||
TrEMBL | G7JNF6 | 1e-92 | G7JNF6_MEDTR; Myb transcription factor | ||||
STRING | AES89397 | 2e-93 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 8e-86 | myb domain protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0571s0018.1.p |