PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0569s0019.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 246aa MW: 27411.3 Da PI: 9.9708 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.5 | 8.5e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+iifs++gkl +y++ Kalax.0569s0019.2.p 9 KMIENKINRQVTFSKRRTGLLKKANEISVLCDAEVALIIFSTKGKLSDYAT 59 68***********************************************86 PP | |||||||
2 | K-box | 98.8 | 7.7e-33 | 83 | 174 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ + + s++ e+a+Lk++ ++Lq++q h++GedL+sL+lkeLq+Le+qLe++lk+iR+kK++l++e+i++l+kk k+lqe+n++L k++ Kalax.0569s0019.2.p 83 TDIESNGSWHLEHARLKARSDTLQKKQSHYMGEDLNSLTLKELQNLENQLENALKHIRAKKSQLMFESISDLKKKDKALQEQNTKLAKQI 172 45566789*********************************************************************************9 PP K-box 99 ee 100 +e Kalax.0569s0019.2.p 173 KE 174 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.838 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.79E-32 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.55E-37 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 2.7E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.7E-24 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.9E-27 | 87 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.407 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MGRGRVQMKM IENKINRQVT FSKRRTGLLK KANEISVLCD AEVALIIFST KGKLSDYATD 60 SCMGRILERY ERYSSAEMQL VATDIESNGS WHLEHARLKA RSDTLQKKQS HYMGEDLNSL 120 TLKELQNLEN QLENALKHIR AKKSQLMFES ISDLKKKDKA LQEQNTKLAK QIKEKEKSQG 180 TLLDQQSHAA SPASLRAPQI CLEPLTVSRG NGYHGAGDGG AASSALHQTN ATTLLPRWML 240 SQLGE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 6e-20 | 1 | 85 | 1 | 84 | MEF2 CHIMERA |
6byy_B | 6e-20 | 1 | 85 | 1 | 84 | MEF2 CHIMERA |
6byy_C | 6e-20 | 1 | 85 | 1 | 84 | MEF2 CHIMERA |
6byy_D | 6e-20 | 1 | 85 | 1 | 84 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001312134.1 | 1e-104 | agamous-like MADS-box protein AGL8 homolog | ||||
Swissprot | Q42429 | 4e-98 | AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog | ||||
TrEMBL | Q8GT99 | 1e-103 | Q8GT99_TOBAC; MADS11 | ||||
STRING | XP_009625854.1 | 1e-103 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 1e-84 | AGAMOUS-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0569s0019.2.p |
Publications ? help Back to Top | |||
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