PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0569s0012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 203aa MW: 23378.7 Da PI: 9.0311 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.8 | 3.5e-12 | 123 | 196 | 19 | 98 |
-HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 k+ +++h + ++e+ ++tlede+g++ k+ + ++ l++GW+ F +++L +gD +vF+l++ ++f +v ++r Kalax.0569s0012.1.p 123 VKPMVQSHAHMPKEDEMITLEDEDGNESPSKYLADITR----LSGGWRCFTLDHELVDGDALVFQLIRPTKF--KVYIIR 196 5777888866677888****************666666....*************************97777..888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-17 | 115 | 198 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-13 | 117 | 198 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.32E-17 | 120 | 196 | No hit | No description |
SMART | SM01019 | 3.8E-11 | 122 | 198 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.1E-10 | 124 | 196 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.093 | 140 | 198 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MVVSATSNYE ELRRQRLEEK KKRMEEVNLL NLSKSLSAAT PKSSPAKHRK PKSARKEVNL 60 SAVRRFRRMA GKSRPDYKEG MRLMLSREDL LNHVYASHES RMSAVERAEQ LESELGSEYP 120 CFVKPMVQSH AHMPKEDEMI TLEDEDGNES PSKYLADITR LSGGWRCFTL DHELVDGDAL 180 VFQLIRPTKF KVYIIRVNEH EN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019074156.1 | 2e-76 | PREDICTED: B3 domain-containing protein At3g19184 isoform X2 | ||||
Swissprot | Q1G3M3 | 8e-55 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | F6HQC1 | 3e-75 | F6HQC1_VITVI; Uncharacterized protein | ||||
STRING | VIT_03s0063g00620.t01 | 4e-76 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 9e-48 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0569s0012.1.p |
Publications ? help Back to Top | |||
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