PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0569s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 275aa    MW: 31271.4 Da    PI: 10.538
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0569s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.42.2e-2971121151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                          krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+iifs++gkl++y++
  Kalax.0569s0006.1.p  71 KRIENKINRQVTFSKRRTGLLKKANEISVLCDAEVALIIFSTEGKLFDYAT 121
                          79***********************************************86 PP
2K-box972.9e-32141233597
                K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                          + ++++ + + s+  e+a+Lk++i++Lq++q h++GedL+sL+lkeLq+Le+qL+++lk+iR+kK++l++e+i+el+kk k+lq +n++L
  Kalax.0569s0006.1.p 141 QLVAADIESNGSWLLEHARLKARIDTLQKKQSHYMGEDLDSLTLKELQNLENQLDNALKHIRTKKSQLMFESISELKKKDKALQGQNTKL 230
                          55555666778999**************************************************************************** PP

                K-box  95 rkk 97 
                           k+
  Kalax.0569s0006.1.p 231 AKQ 233
                          986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.95963123IPR002100Transcription factor, MADS-box
SMARTSM004329.1E-3963122IPR002100Transcription factor, MADS-box
CDDcd002658.03E-3964138No hitNo description
SuperFamilySSF554552.09E-3264150IPR002100Transcription factor, MADS-box
PROSITE patternPS00350065119IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-306585IPR002100Transcription factor, MADS-box
PfamPF003191.3E-2472119IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-3085100IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-30100121IPR002100Transcription factor, MADS-box
PfamPF014863.1E-26150233IPR002487Transcription factor, K-box
PROSITE profilePS5129716.008150243IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MTIKDKRDNK KPKTSLVSPQ AENHSHLLHS TRILLLIHRL LPAIARLSPT ACLVLLFLQR  60
VRMGRGRVQM KRIENKINRQ VTFSKRRTGL LKKANEISVL CDAEVALIIF STEGKLFDYA  120
TDSCMERILE RYERYSSAKT QLVAADIESN GSWLLEHARL KARIDTLQKK QSHYMGEDLD  180
SLTLKELQNL ENQLDNALKH IRTKKSQLMF ESISELKKKD KALQGQNTKL AKQPLQIKEK  240
EKSQGTLLDQ QSHAASPASL RAPQICLEPL TVSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-2163147184MEF2 CHIMERA
6byy_B1e-2163147184MEF2 CHIMERA
6byy_C1e-2163147184MEF2 CHIMERA
6byy_D1e-2163147184MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017973951.13e-98PREDICTED: agamous-like MADS-box protein AGL8 homolog isoform X3
SwissprotQ6E6S72e-96AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A1S3YGF61e-96A0A1S3YGF6_TOBAC; agamous-like MADS-box protein AGL8 homolog
STRINGXP_009625854.19e-97(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-91AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]