PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0568s0014.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ZF-HD
Protein Properties Length: 325aa    MW: 35966.2 Da    PI: 9.1529
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0568s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer84.89.7e-274296359
          ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                         ++ +keClkNhAa lGgha+DGC+Efmp+  e   +  +kC ACgCHRnFHR+ ++ 
  Kalax.0568s0014.1.p 42 EMIFKECLKNHAAGLGGHALDGCCEFMPA--ERVGPGLMKCEACGCHRNFHRQATAA 96
                         689*************************9..4456999**************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.5E-224393IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.1E-224592IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-84596IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.1854593IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.1E-25190263IPR009057Homeodomain-like
SuperFamilySSF466897.17E-16191263IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-23202258IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MKPNQMLEIG PGPATNQQLV AQTVSYAYQP VSPPHAAEET TEMIFKECLK NHAAGLGGHA  60
LDGCCEFMPA ERVGPGLMKC EACGCHRNFH RQATAAQSHY REPPRSVVGV TPPHFSFMPR  120
RCSSSPSTST SPHLSQPRQL NPPPQPPPTA ARYLHHHSFG AHMLMPLSTG KSVSPPPSTA  180
PIKPSDHHQT RRQQNPNPST RRKRFRSKFS SEQKHRMRRF AEGLNWKIRK HDDTLVARFC  240
ADVGVSRGVL KVWMHNNKHT AGKIVPENPT DSSSGNNGED EGGRDEQLQL SNSEHRQQVD  300
EGDDGLGLGV DHHQRHNHPL NQLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-202032611876ZF-HD homeobox family protein
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212218QKHRMRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.18e-26zinc finger homeodomain 1