PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0563s0001.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 296aa MW: 32917.7 Da PI: 5.0713

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0563s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.9	2.2e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++lv++v+ +G g W+ I++ g++R++k+c++rw++yl Kalax.0563s0001.1.p 14 KGAWTAMEDQKLVEYVEAHGEGKWRNIPKGAGLKRCGKSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	51.6	2.2e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ Kalax.0563s0001.1.p 67 RGNISPDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 7899****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.7E-25	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.797	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	6.36E-30	12	108	IPR009057	Homeodomain-like
SMART	SM00717	4.3E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.13E-11	16	61	No hit	No description
PROSITE profile	PS51294	25.601	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.8E-25	65	116	IPR009057	Homeodomain-like
SMART	SM00717	5.8E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	7.2E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	6.66E-12	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MGRSPCCAKE GLNKGAWTAM EDQKLVEYVE AHGEGKWRNI PKGAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SPDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLSKKLGSSN 120 MNNNMKKMQQ KHQQPTFLIT QSSQVGQAPD EEESSLVQTA PEDQILNSSR VMNANCSPNI 180 IVSGSNEDSW SLDHDGELEM DFDIRDLIDF AEFGNASLRG DKTYCGNNNI AGATLGSSSN 240 GEQDNSCLVI PEHILALPGH KCHQSQSDDF SCLASLFDPT AADENWLLND GDWFF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-28	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019102913.1	8e-78	PREDICTED: transcription factor MYB23
TrEMBL	A0A0J8B896	2e-76	A0A0J8B896_BETVU; Uncharacterized protein
STRING	XP_010666251.1	3e-77	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16720.1	2e-60	myb domain protein 7

Link Out ? help Back to Top
Phytozome	Kalax.0563s0001.1.p