PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0560s0007.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 274aa MW: 30126 Da PI: 8.4949

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0560s0007.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.4	2.5e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++ +G g+W++ ++ g+ R++k+c++rw +yl Kalax.0560s0007.1.p 14 KGAWTKEEDGRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	58.7	1.3e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel++d++ +lG++ W++Ia +++ gRt++++k++w+++ Kalax.0560s0007.1.p 67 RGNFTEEEDELIIDLHGLLGNK-WSLIAGKLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.8E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.569	9	61	IPR017930	Myb domain
SMART	SM00717	1.1E-11	13	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.49E-29	13	108	IPR009057	Homeodomain-like
Pfam	PF00249	4.0E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	5.32E-10	16	61	No hit	No description
PROSITE profile	PS51294	28.704	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	3.6E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-16	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.86E-13	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDGRLVAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY 60 LRPDLKRGNF TEEEDELIID LHGLLGNKWS LIAGKLPGRT DNEIKNYWNT HIKRKLLNRG 120 IDPASHRSIT QPSASPSPDS HAPAAATDSH PTTTATISFS APAKPMANTI KQEDDRLQFS 180 STSFIPISKQ EDQIQTQSHT DLNLELRISP PYQQLSDPHP QQLQINTGSR QLCFSCSLGL 240 RSGEECDCSA GNGSRGSVVM GSVGNDFLGL KMK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-29	14	116	7	108	B-MYB
1h8a_C	8e-29	13	116	26	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001233975.1	1e-111	transcription factor
Refseq	XP_015089157.1	1e-111	myb-related protein 308-like
Swissprot	P81393	1e-105	MYB08_ANTMA; Myb-related protein 308
TrEMBL	Q43525	1e-109	Q43525_SOLLC; Transcription factor
STRING	Solyc10g055410.1.1	1e-110	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	2e-95	myb domain protein 4

Link Out ? help Back to Top
Phytozome	Kalax.0560s0007.1.p

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]