PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0559s0013.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 430aa MW: 45881.2 Da PI: 5.929 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.7 | 1.5e-11 | 240 | 285 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Kalax.0559s0013.3.p 240 HSIAERLRRERIAERMKGLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 285 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-16 | 233 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.66E-12 | 233 | 289 | No hit | No description |
PROSITE profile | PS50888 | 16.964 | 235 | 284 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-15 | 237 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.6E-9 | 240 | 285 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-13 | 241 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MQPQPQPQQQ CNGSSASPVD DMQHNLNLNS STAASPLMKF PLLPSSHHDL QTSSHHFDQM 60 RQSFDHAPPA HDDFLEQMLS TLNSASAWDL KAAGESSGSP EESDNGVSAA AFQFDEAVVA 120 SRLRAQQHHQ HMLPLPFGVD NLVDRSRGSL LEGSSFDSYH PGVENQMAGL FNGSFVGSLL 180 GPGQQMNLPE QFQSSQQGGP SFEAPAAMNN QAPISSSGGA AAAPPKQRVR ARRGQATDPH 240 SIAERLRRER IAERMKGLQE LVPNANKTDK ASMLDEIIDY VKFLQLQVKV LSMSRLGGAG 300 AVAPLVADNM SSEGGGDSLT SRAMMRRRSI NNGEVTATST DEVEVSAAVA EKQVAKLMEE 360 DMGSAMQYLQ SKGLCLMPIS LAAAISTAKN PLTSSSTTKR GTNSPLTTRT DVAQVLELKG 420 SADDFGIQK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 244 | 249 | RLRRER |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023874690.1 | 1e-103 | transcription factor bHLH66-like | ||||
TrEMBL | A0A2N9G1V1 | 1e-103 | A0A2N9G1V1_FAGSY; Uncharacterized protein | ||||
STRING | VIT_11s0037g00040.t01 | 1e-100 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 7e-52 | LJRHL1-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0559s0013.3.p |