PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0550s0030.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 576aa    MW: 63743.9 Da    PI: 5.3618
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0550s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS286.47.9e-882065734374
                 GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl....fsevs 88 
                           Ll++Ae v s+++e+a++lL++ + l+spd+ ++qR+++yfteAL++r+ r +++ +++ ++ +++ + n  e++++ +     f++  
  Kalax.0550s0030.1.p 206 SLLSAAESVGSQQFERASRLLSQCEFLSSPDACTVQRVVHYFTEALRERIDReTGNFTSNYFKEKQACDLN--EAMKYGNPitlsFYQDI 293
                          699*************************************************4455555555555555433..333322214457***** PP

                 GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                          P+ + sh+t  qaI+e v++++++H iDf++ +G++   L+qaLa+R e   +l+iT+v     +s+ +le tg rL +fA+++++p++f
  Kalax.0550s0030.1.p 294 PLSQASHFTGIQAIVEHVATAKKIHMIDFGLRHGVHSTILMQALAARHEAVEHLKITAVTT---TSRSKLEPTGTRLLSFARTMKIPLSF 380
                          ************************************************************9...689*********************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          ++++  ++ dl+ e ++++ +E ++V   l + +l+    +++++ d++++++k+l P ++v++e ea+hns+ F++rf+eal +ysa f
  Kalax.0550s0030.1.p 381 DIVMIGDMLDLREELFELDGEEEVVVYAPLLMTTLV----AQRDRLDHLMSVLKNLDPCLMVMAEVEANHNSPAFVNRFIEALFFYSAYF 466
                          ***999************************888887....55556777****************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                          d +++ + +++  ri  E ++++r i+n+va+ega+r+ rh + + Wr+ + ++G+ + ++s  a+ qa+l+l +++ +   +++ + +s
  Kalax.0550s0030.1.p 467 DFIASCMENDNPGRIAAETVFFSRCIRNIVATEGADRTTRHVKIGVWRSYFARFGLVETEFSAAATYQAQLVLDQFSsGSSCTIDTDGKS 556
                          *****************************************************************************88889******** PP

                 GRAS 358 lvlgWkdrpLvsvSaWr 374
                          l++gWk+ pL s+S W+
  Kalax.0550s0030.1.p 557 LIMGWKGTPLHSLSIWK 573
                          ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.11177552IPR005202Transcription factor GRAS
PfamPF035142.7E-85206573IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MLRDEQYQSA SHERLISFKG NKGSPKQYRG EEDGRNSGAA DPGSSDLGSL GEGLSSSKYL  60
QQHQQVSNGY GFFDDVNFDV DSPPVQQCFD EMSKLSKLHS QAPAVEPRKE AGISVQYASL  120
ELLNSYGSGV KRLSELRPSP SQARVESSWT RPNLSIDEIL KTAAENFISS SSHGVDGSPI  180
LSGAAHGVYF SGLADDQVTD VELLVSLLSA AESVGSQQFE RASRLLSQCE FLSSPDACTV  240
QRVVHYFTEA LRERIDRETG NFTSNYFKEK QACDLNEAMK YGNPITLSFY QDIPLSQASH  300
FTGIQAIVEH VATAKKIHMI DFGLRHGVHS TILMQALAAR HEAVEHLKIT AVTTTSRSKL  360
EPTGTRLLSF ARTMKIPLSF DIVMIGDMLD LREELFELDG EEEVVVYAPL LMTTLVAQRD  420
RLDHLMSVLK NLDPCLMVMA EVEANHNSPA FVNRFIEALF FYSAYFDFIA SCMENDNPGR  480
IAAETVFFSR CIRNIVATEG ADRTTRHVKI GVWRSYFARF GLVETEFSAA ATYQAQLVLD  540
QFSSGSSCTI DTDGKSLIMG WKGTPLHSLS IWKFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-3721157227378Protein SCARECROW
5b3h_A3e-3721157226377Protein SCARECROW
5b3h_D3e-3721157226377Protein SCARECROW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.16e-44RGA-like 1