PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0548s0024.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 446aa    MW: 50477.5 Da    PI: 6.9289
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0548s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.55.5e-26119217186
             trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77 
                          +W++q+v++Li+a+++++++ ++g             +kk++W+++sk+m+ergf +sp+qC++k+++lnkryk+++++ +++ ++++++
  Kalax.0548s0024.1.p 119 KWSDQMVKLLITAVSYVGQDASSGYrggggrmkfalmQKKGKWKSISKVMAERGFYVSPQQCEDKFNDLNKRYKRLNDILGRGtSCQVVE 208
                          7********************9875556677788888**********************************************6699999 PP

             trihelix  78 tcpyfdqle 86 
                          +  ++d ++
  Kalax.0548s0024.1.p 209 KPELLDMMD 217
                          999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-22117243No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MEGNLNMVPG GGSYGGGIDQ QGSMRYNHHH RPSSHAVPDN DLRQGPALHP SIHDVFPPFT  60
VGTMQDCGDR SLSLADYNKA ERARNVTSDD DEPGVMEDAG NCHNGGGKGA KGSFWHRVKW  120
SDQMVKLLIT AVSYVGQDAS SGYRGGGGRM KFALMQKKGK WKSISKVMAE RGFYVSPQQC  180
EDKFNDLNKR YKRLNDILGR GTSCQVVEKP ELLDMMDHLS EKSKEDVRKI LSSKHLFYEE  240
MCSYHNGNRL HLPHDPALQR ALHLALESRE ISEISDGRRK SVDDYDEDDH GGESDDCDEF  300
EECHVAHGDS RALCGVMEGS SAKRTKQDLS HDEFSFGNAQ EGSKISQLNT QNVHIAMNQA  360
YPEGSKSAWY NSQMMQSRSL KLEEKRTKIQ MEMLELEKQR LKWQRFSKKK DRELEKMRLE  420
NERMKLENES MALELKRREI GLKGD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473052.10.0uncharacterized protein LOC102612442
TrEMBLA0A067GYJ60.0A0A067GYJ6_CITSI; Uncharacterized protein
TrEMBLV4V6N50.0V4V6N5_9ROSI; Uncharacterized protein
STRINGXP_006473052.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-139sequence-specific DNA binding transcription factors