PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0548s0013.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WRKY

Protein Properties

Length: 637aa MW: 69047.2 Da PI: 6.2654

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0548s0013.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.4	2e-30	385	443	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Kalax.0548s0013.1.p 385 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILVTTYEGNHNHP 443 7*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.6E-33	369	445	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-27	377	445	IPR003657	WRKY domain
PROSITE profile	PS50811	29.7	379	445	IPR003657	WRKY domain
SMART	SM00774	1.7E-36	384	444	IPR003657	WRKY domain
Pfam	PF03106	2.5E-26	386	443	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 637 aa Download sequence Send to blast
MATKAGFSSS GLSIDSDPFS SSSSPPIQHH LFFHPPPPPH IHYMESTTTA TSAHSKASWS 60 NPSPTIQFPL NLNYTSPDEH QPQDDDHGDI KFIHDDLRLS SDNEDHPHNR VINEMDFFAV 120 ADDHNKKKLI MNEDGGSSKQ AASTDNFDHQ NATTKDPHHG STQDFNNVYT GLHLLTANTS 180 STDQSVVDDG SSPASDDARA KNEIVMLQAE IERMNKENQR LKDMLSHVSN NYSAMQVHLM 240 TLGDSQKKDA RDQQQLQMIA QEHQKEDQQQ MLGGSPQKQL MDLGLAPASD IHDQHSLSSS 300 ENHEDGRSNS SPTNLEAASK LQMEEAREQI RVGMGREGEA AHGLPNKVPK FNPSKSNADQ 360 ASSTEATMRK ARVSVRARSE APMITDGCQW RKYGQKMAKG NPCPRAYYRC TMAAGCPVRK 420 QVQRCAEDRT ILVTTYEGNH NHPLPPAAMA MASTTSSAAR MLLSGSMSSA DGLMNPNFLA 480 RTLLPCSSNM ATISASAPFP TVTLDLTLNP NATLPPPNTL TQIQSQFQNP SQNLPLLPQI 540 LTQALYSHSK FSGLHMSQND MDSSSLAPKQ QGSLADSLTA ASAAIAADPN FTAVIAAAIS 600 SFIGNSHPSN NITNNRTNSN TDSGANIVNS SSFPEN*

Sequence ? help Back to Top

Protein Sequence Length: 637 aa Download sequence Send to blast

MATKAGFSSS GLSIDSDPFS SSSSPPIQHH LFFHPPPPPH IHYMESTTTA TSAHSKASWS  60
NPSPTIQFPL NLNYTSPDEH QPQDDDHGDI KFIHDDLRLS SDNEDHPHNR VINEMDFFAV  120
ADDHNKKKLI MNEDGGSSKQ AASTDNFDHQ NATTKDPHHG STQDFNNVYT GLHLLTANTS  180
STDQSVVDDG SSPASDDARA KNEIVMLQAE IERMNKENQR LKDMLSHVSN NYSAMQVHLM  240
TLGDSQKKDA RDQQQLQMIA QEHQKEDQQQ MLGGSPQKQL MDLGLAPASD IHDQHSLSSS  300
ENHEDGRSNS SPTNLEAASK LQMEEAREQI RVGMGREGEA AHGLPNKVPK FNPSKSNADQ  360
ASSTEATMRK ARVSVRARSE APMITDGCQW RKYGQKMAKG NPCPRAYYRC TMAAGCPVRK  420
QVQRCAEDRT ILVTTYEGNH NHPLPPAAMA MASTTSSAAR MLLSGSMSSA DGLMNPNFLA  480
RTLLPCSSNM ATISASAPFP TVTLDLTLNP NATLPPPNTL TQIQSQFQNP SQNLPLLPQI  540
LTQALYSHSK FSGLHMSQND MDSSSLAPKQ QGSLADSLTA ASAAIAADPN FTAVIAAAIS  600
SFIGNSHPSN NITNNRTNSN TDSGANIVNS SSFPEN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-21	371	447	1	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269\|PubMed:25733771}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00428	DAP	Transfer from AT4G04450	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023921697.1	0.0	probable WRKY transcription factor 31
Swissprot	Q9XEC3	1e-129	WRK42_ARATH; WRKY transcription factor 42
TrEMBL	A0A438IL69	1e-179	A0A438IL69_VITVI; WRKY transcription factor 6
STRING	VIT_12s0059g00880.t01	1e-179	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22070.1	1e-106	WRKY DNA-binding protein 31

Link Out ? help Back to Top
Phytozome	Kalax.0548s0013.1.p