PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0545s0021.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 351aa    MW: 38066.8 Da    PI: 10.5114
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0545s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.9e-30274331359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+ +++tYeg+Hnh 
  Kalax.0545s0021.1.p 274 DDFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAVDDPTQLIVTYEGDHNHA 331
                          99************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.9E-16226270IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.3E-31261331IPR003657WRKY domain
PROSITE profilePS5081129.907267333IPR003657WRKY domain
SuperFamilySSF1182907.45E-26269331IPR003657WRKY domain
SMARTSM007741.8E-35272332IPR003657WRKY domain
PfamPF031061.1E-25274330IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MAVELLRMGY RAAATENNLP AKMEEAASAG LQSVEQLIRL LSQRQQQMER SNSSGNRASE  60
SSDLDYGAVA DVAVNKFKTM ISLLDRPRTG HARFRRAPVT QKAVDPVAQT TQRSENMEEK  120
PTAQSASARA FTASTSSQRL PPLPQNHHHH NHNHHNSHPL KIAHSAMTKT PSKDSIATIS  180
FSAASSFVSG LSGETESVQP SMSSGFQFTH ISQSSGKPPL SSSSLKRKCS SMDDSARCGG  240
SSARCHCSKK RKSRVKRVVR IPAISLKMAD IPPDDFSWRK YGQKPIKGSP HPRGYYKCSS  300
VRGCPARKHV ERAVDDPTQL IVTYEGDHNH ARTSVKEAAA AAAALVLESS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-18260330271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016568783.11e-130PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX09e-92WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A1U8GJ781e-129A0A1U8GJ78_CAPAN; probable WRKY transcription factor 7
STRINGevm.model.supercontig_21.1591e-127(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.13e-49WRKY DNA-binding protein 15