PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0543s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 271aa MW: 30279.4 Da PI: 8.557 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.9e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++++G g+W+t ++ g+ R++k+c++rw +yl Kalax.0543s0001.1.p 13 KGAWSKQEDQKLIDYIRKYGEGCWRTLPKDAGLLRCGKSCRLRWINYL 60 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.7e-16 | 66 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Kalax.0543s0001.1.p 66 RGNFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111 8999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-24 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.668 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.45E-28 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.1E-14 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.45E-11 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 26.906 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-26 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-15 | 66 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.65E-11 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MRKPCCDKQG TNKGAWSKQE DQKLIDYIRK YGEGCWRTLP KDAGLLRCGK SCRLRWINYL 60 RPDLKRGNFA EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LRRKLINQGI 120 DPNNHKIIRH TSLHHQYPSQ NYQVPAATTL SHLHRSSNHK PQKGEEPNYK PAATNCNMII 180 NTVDDDAGQA ISEEAASSVE EAAPCSSCSL LPDLNLDLMI CTPSHLLGQK SKPNDNEVAA 240 TKDHHQRQVV EAAAAGGLQA LVHMIKIGLC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-29 | 12 | 115 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024196862.1 | 6e-92 | transcription repressor MYB6-like | ||||
Swissprot | Q9SZP1 | 5e-76 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A2N9FEC3 | 4e-91 | A0A2N9FEC3_FAGSY; Uncharacterized protein | ||||
TrEMBL | A0A2P6R3E5 | 1e-90 | A0A2P6R3E5_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004297358.1 | 5e-91 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 5e-77 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0543s0001.1.p |