PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0526s0026.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 337aa    MW: 36051.3 Da    PI: 9.6559
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0526s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.98.1e-21138187255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrdp     + +r++lg+f+tae Aa+a+++a+++++g
  Kalax.0526s0026.1.p 138 RYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFDTAEAAARAYDEAALRFRG 187
                          7********.**********93....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.5E-38138201IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23138196IPR016177DNA-binding domain
PROSITE profilePS5103225.883138195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-33138196IPR001471AP2/ERF domain
PfamPF008471.2E-14138187IPR001471AP2/ERF domain
PRINTSPR003677.9E-12139150IPR001471AP2/ERF domain
CDDcd000181.47E-16144197No hitNo description
PRINTSPR003677.9E-12161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MLSDYSQARE MSAMVTALTH VVSGQRPTSE QWLYPTGPSY AASDRQSGFA SWSPSGSSSG  60
QKRSRMEQQS RPSATTPPDD KNTLQRHHII STADFASSSS SPPPPSAAAA VSATQATQMP  120
APGSATTAED AGERRSRRYR GVRQRPWGKW AAEIRDPQKA ARVWLGTFDT AEAAARAYDE  180
AALRFRGNRA KLNFPENVRS MPPPPSASTR VPISSGPATI RPPDYARPQL QFQRQQELGD  240
YAQYSQLLQG GSSSTSLLDQ FALSHLQPPT TTAATAFGSS FSGAYPQTSG NEQSEWGFHG  300
WSGDAGGGSS GREVSSKPSP PTSTWTEDNQ YPNSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-23135200268ATERF1
3gcc_A1e-23135200268ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.13e-15ERF family protein