PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0522s0010.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 308aa    MW: 34150.3 Da    PI: 5.9603
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0522s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.2e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg WT+eEd +++ +v+ +G g+W++++++ g++R++k+c++rw +yl
  Kalax.0522s0010.1.p 14 RGLWTAEEDAKILAYVASHGVGNWTLVPQKAGLNRCGKSCRLRWTNYL 61
                         788*******************************************97 PP
2Myb_DNA-binding44.53.5e-1470110446
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +T+eE++ ++++++  G++ W++Ia+ ++ gRt++++k++w++
  Kalax.0522s0010.1.p  70 FTAEEEDYIIELHRAVGSR-WSLIAKQLP-GRTDNDVKNYWNT 110
                          8******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-24564IPR009057Homeodomain-like
PROSITE profilePS5129426.427965IPR017930Myb domain
SuperFamilySSF466892.16E-3011108IPR009057Homeodomain-like
SMARTSM007171.2E-141363IPR001005SANT/Myb domain
PfamPF002498.3E-161461IPR001005SANT/Myb domain
CDDcd001677.55E-121761No hitNo description
Gene3DG3DSA:1.10.10.604.9E-2465117IPR009057Homeodomain-like
PROSITE profilePS5129417.86166116IPR017930Myb domain
SMARTSM007174.3E-1466114IPR001005SANT/Myb domain
CDDcd001671.82E-1170112No hitNo description
PfamPF002496.4E-1370110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGRPPCCDKS NVKRGLWTAE EDAKILAYVA SHGVGNWTLV PQKAGLNRCG KSCRLRWTNY  60
LRPDLKHEGF TAEEEDYIIE LHRAVGSRWS LIAKQLPGRT DNDVKNYWNT KLKKKLVSMG  120
IDPITHKPIS RVVTDCHNII NLTTQAASYN RLRDQASLTT SNPCFFPSAP CFSDFNCQAL  180
MQTYVPQSPT ASSSSSSCTV NQPVESFPAS TAQVYSFSWI DHVLQDNWCI NDDLDQSQGG  240
FSDMPVSAGL KLGEADAEKS KTVGATCNPS EAYSSSCSVK TFVDNILDRD FEIMSDCPRL  300
LDESFEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276072.22e-96PREDICTED: transcription factor MYB35
SwissprotQ9LSI71e-79MYB35_ARATH; Transcription factor MYB35
TrEMBLA5BSP61e-97A5BSP6_VITVI; Uncharacterized protein
STRINGVIT_14s0066g02180.t014e-95(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.13e-81MYB family protein
Publications ? help Back to Top
  1. Tsugama D, et al.
    A putative MYB35 ortholog is a candidate for the sex-determining genes in Asparagus officinalis.
    Sci Rep, 2017. 7: p. 41497
    [PMID:28176806]
  2. Lou Y, et al.
    Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana.
    New Phytol., 2018. 217(1): p. 378-391
    [PMID:28940573]
  3. Li DD,Xue JS,Zhu J,Yang ZN
    Gene Regulatory Network for Tapetum Development in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 1559
    [PMID:28955355]