PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0520s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 196aa    MW: 21120.9 Da    PI: 6.4874
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0520s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.42.4e-38151151100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++Cv+apyf ++q +++fa++hk+FGasn +k+l ++p+++r da+ s++yeA ar+rdPvyG+v+ i++lqqq+ +
  Kalax.0520s0013.1.p  15 PCGACKFLRRKCVSGCVFAPYFQSDQgAAHFAAIHKVFGASNASKMLLSIPPQHRLDAVVSMCYEALARVRDPVYGCVAQIFALQQQVLN 104
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+ae+a ++++
  Kalax.0520s0013.1.p 105 LQAEVACTQAK 115
                          ******99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.77214116IPR004883Lateral organ boundaries, LOB
PfamPF031955.1E-3715113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSSNWGGGSS TIIGPCGACK FLRRKCVSGC VFAPYFQSDQ GAAHFAAIHK VFGASNASKM  60
LLSIPPQHRL DAVVSMCYEA LARVRDPVYG CVAQIFALQQ QVLNLQAEVA CTQAKLATLR  120
PGQQPYPSDQ SLSGFPSMRC EDALQMQSWS PAELVDQGEV DDGDQEEELQ SLARQLVSRH  180
FSSSGFTFRP PTSSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-351411610111LOB family transfactor Ramosa2.1
5ly0_B1e-351411610111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090856.24e-68LOB domain-containing protein 19
SwissprotO813223e-53LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A4D8XZW07e-68A0A4D8XZW0_SALSN; Uncharacterized protein
TrEMBLA0A4D8ZUD47e-68A0A4D8ZUD4_SALSN; Uncharacterized protein
STRINGEOX961942e-65(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.12e-55LOB domain-containing protein 31