PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0518s0015.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 275aa    MW: 30402.8 Da    PI: 6.6208
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0518s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-161360148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W+++Ed++l+d++++ G g+W+t ++  g+ R++k+c++rw +yl
  Kalax.0518s0015.1.p 13 KGAWSKQEDQKLIDYIRKNGEGCWRTLPQAAGLLRCGKSCRLRWINYL 60
                         79******************************99************97 PP
2Myb_DNA-binding51.91.8e-1666111148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Kalax.0518s0015.1.p  66 RGNFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111
                          8999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-22463IPR009057Homeodomain-like
PROSITE profilePS5129416.387860IPR017930Myb domain
SuperFamilySSF466891.53E-2711107IPR009057Homeodomain-like
SMARTSM007172.2E-121262IPR001005SANT/Myb domain
PfamPF002491.5E-141360IPR001005SANT/Myb domain
CDDcd001675.67E-101560No hitNo description
PROSITE profilePS5129426.90661115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2564115IPR009057Homeodomain-like
SMARTSM007171.0E-1565113IPR001005SANT/Myb domain
PfamPF002494.6E-1566111IPR001005SANT/Myb domain
CDDcd001671.34E-1168111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MRKPCCEKQD TNKGAWSKQE DQKLIDYIRK NGEGCWRTLP QAAGLLRCGK SCRLRWINYL  60
RPDLKRGNFA EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LRRKLANMGI  120
DPNNHKLAKH PSLYHPAQSQ APVAGRNDGS KSATKSSNFH KSNNGVQTAE DEQPKPAADT  180
NCNIIINSAD DDDDDDGQAI SEAASSLEEA PCSSSLPDLN LDLMISTPSS HPAGQKSNPS  240
NYEDQQRVQQ QVDAAGGRLQ VLMEDGDKTL LLFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28101154108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044170.13e-98PREDICTED: transcription repressor MYB4
RefseqXP_023879392.13e-98transcription repressor MYB4-like
TrEMBLA0A0F7CS103e-97A0A0F7CS10_9ROSI; Transcription repressor MybC2-L1 (Fragment)
STRINGXP_010044170.11e-97(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.18e-77myb domain protein 4