PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0510s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GATA | ||||||||
Protein Properties | Length: 306aa MW: 33217.9 Da PI: 6.8555 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.3 | 3.7e-17 | 225 | 261 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt+ Tp++Rrgp+g++tLCnaCGl+++ kg+ Kalax.0510s0020.1.p 225 CRHCGTSGkdTPMMRRGPEGPRTLCNACGLMWANKGT 261 *******999************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 1.4E-12 | 82 | 117 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.911 | 82 | 117 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.1E-13 | 84 | 116 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.917 | 150 | 192 | IPR010402 | CCT domain |
Pfam | PF06203 | 9.2E-16 | 150 | 192 | IPR010402 | CCT domain |
SMART | SM00401 | 2.3E-11 | 219 | 272 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 8.88 | 219 | 275 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.04E-11 | 222 | 278 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.4E-14 | 224 | 266 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.03E-15 | 224 | 277 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 225 | 252 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.7E-15 | 225 | 261 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MPYSHPTGAE MDDMHGRDAQ MGDSIMQYMQ EHDHEVHQMG NVSGMEEGVN DGVVGGNEGM 60 DGHMGREGEN MGDDRYAIVA QGPENGNQLT LSFQGQVYVF DSVSPDKVQA VLLLLGGQEL 120 PSTMSTSTVL NPQGSRGISG MPQRLSVSQR LASLTRFKEK RKERNFEKKI RYTVRKEVAL 180 RMNRNKGQFT SSKPNTDDSG SGVTSWGSSQ NWASDGSGSQ QAAACRHCGT SGKDTPMMRR 240 GPEGPRTLCN ACGLMWANKG TLKDLSKGTP SQPRQNHTMN HNVVENGHLE ADQMVLRPGN 300 ISDSS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00369 | DAP | Transfer from AT3G21175 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015894174.1 | 1e-115 | GATA transcription factor 28 isoform X1 | ||||
Refseq | XP_021845718.1 | 1e-115 | GATA transcription factor 28 | ||||
Refseq | XP_021845719.1 | 1e-115 | GATA transcription factor 28 | ||||
Swissprot | Q8GXL7 | 1e-111 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A0K9RS54 | 1e-113 | A0A0K9RS54_SPIOL; Uncharacterized protein | ||||
STRING | XP_010696086.1 | 1e-112 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 6e-95 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0510s0020.1.p |
Publications ? help Back to Top | |||
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