PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0509s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 298aa MW: 33137.7 Da PI: 7.109 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.7 | 3.7e-15 | 30 | 77 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l+++++ G g+W+ a++ g++Rt+k+c++rw++yl Kalax.0509s0003.1.p 30 RGPWTIEEDSMLIHYIACNGEGRWNMLAKCAGLKRTGKSCRLRWLNYL 77 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.5e-16 | 83 | 126 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ +++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Kalax.0509s0003.1.p 83 RGNLSPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNFWRT 126 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.749 | 25 | 77 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.99E-30 | 28 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-11 | 29 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-13 | 30 | 77 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-21 | 31 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.61E-9 | 32 | 77 | No hit | No description |
PROSITE profile | PS51294 | 24.51 | 78 | 132 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-14 | 82 | 130 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-15 | 83 | 126 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-23 | 85 | 131 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.22E-11 | 87 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MSGGSVTNNG QGTKTSSMSN IEEDEAELRR GPWTIEEDSM LIHYIACNGE GRWNMLAKCA 60 GLKRTGKSCR LRWLNYLKPD VKRGNLSPQE QLLILELHSK WGNRWSKIAQ HLPGRTDNEI 120 KNFWRTRVQK QARRLNPDTT ADHQQLALPA FSQTNSSASS LAMSAQEHNI IPNVSNMSPP 180 RNWHNIFSPN HATTLLGESS SSRFPQPGVA DHHQTTTTTS PGNVITYGNS LYMDNGGNPL 240 FHNEGCYYVD NTHAADASGG FGLGDASVAP SGRRDWVLDD EVVNSMWNNT DELWQFR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-24 | 27 | 132 | 4 | 108 | B-MYB |
1gv2_A | 5e-24 | 27 | 132 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-23 | 27 | 132 | 55 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-23 | 27 | 132 | 55 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 8e-24 | 27 | 132 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019256818.1 | 5e-78 | PREDICTED: transcription factor MYB108-like | ||||
Refseq | XP_027154094.1 | 9e-78 | transcription factor MYB62 | ||||
TrEMBL | A0A1R3GXC9 | 4e-78 | A0A1R3GXC9_COCAP; Uncharacterized protein | ||||
STRING | POPTR_0010s13290.1 | 7e-77 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 3e-71 | myb domain protein 62 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0509s0003.1.p |