PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0501s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 223aa    MW: 24542.9 Da    PI: 9.6087
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0501s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.34e-18107157255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp  ng  +r +lg+f tae+Aa a+++a+ +++g
  Kalax.0501s0013.1.p 107 HYRGVRRRP-WGKFAAEIRDPARNG--ARLWLGTFATAEDAAVAYDRAAFRMRG 157
                          7********.**********97676..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.8E-31106165IPR001471AP2/ERF domain
SMARTSM003802.8E-37107171IPR001471AP2/ERF domain
PfamPF008473.9E-12107157IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-23107167IPR016177DNA-binding domain
PROSITE profilePS5103224.289107165IPR001471AP2/ERF domain
CDDcd000182.17E-28107165No hitNo description
PRINTSPR003674.7E-13108119IPR001471AP2/ERF domain
PRINTSPR003674.7E-13147167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MCDQVCSDND LAFLESVRRH LLDDSETPMM FPTAPRYART SSSSSLFTEN WGELPLQEND  60
PEDMVLLGVL RDAERAGWVP CLKAEPMEED RRGGGGGLVV GPAKGRHYRG VRRRPWGKFA  120
AEIRDPARNG ARLWLGTFAT AEDAAVAYDR AAFRMRGTRA LLNFPLRINS GEPAPVRITA  180
KRSSPEPSSS SSGRVASEKK MRKVVKKEEV AMWTGVGHLL VS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-40103172170ATERF1
3gcc_A4e-40103172170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8698632e-31GQ869863.1 Actinidia deliciosa ethylene response factor 12 (ERF12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538752.24e-75ethylene-responsive transcription factor 2
SwissprotO803372e-65EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLK7LMW68e-74K7LMW6_SOYBN; Uncharacterized protein
STRINGGLYMA11G03910.21e-74(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-52ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]