PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0499s0009.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 234aa MW: 26185.7 Da PI: 8.5876 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.8 | 4.9e-20 | 73 | 127 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq + Lee F++n++++ +++eeLA++l+L rqV vWFqNrRa+ k Kalax.0499s0009.1.p 73 RKKLRLSKEQSQLLEESFRQNHTLNPKQKEELADRLNLRPRQVEVWFQNRRARSK 127 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 117.4 | 7.8e-38 | 73 | 161 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlskeq++lLEesF+++++L+p++K+ela +L+l+prqv+vWFqnrRAR k+kq+E ++e+Lkr++ +l+e+n++L+keveeLr+ Kalax.0499s0009.1.p 73 RKKLRLSKEQSQLLEESFRQNHTLNPKQKEELADRLNLRPRQVEVWFQNRRARSKLKQTEIECEYLKRWFGSLTEQNRKLQKEVEELRA 161 69*************************************************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-20 | 51 | 130 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.17E-20 | 58 | 130 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.123 | 69 | 129 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-18 | 71 | 133 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.06E-18 | 72 | 130 | No hit | No description |
Pfam | PF00046 | 2.3E-17 | 73 | 127 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 104 | 127 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.6E-21 | 129 | 172 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.2E-9 | 129 | 163 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MGGVSPTTLT CLDLTISVPG SSSVGDVNMK PLRLVSKRPE PDDNWINIGC PNSSEEAEDN 60 DTDSPKGDHN PPRKKLRLSK EQSQLLEESF RQNHTLNPKQ KEELADRLNL RPRQVEVWFQ 120 NRRARSKLKQ TEIECEYLKR WFGSLTEQNR KLQKEVEELR AMKVGPPTVL SARNCEPTPT 180 SSLTMCPRCE RVSSTTAHVD TKPTSGSLPP PPCRIKSRLC SIADSPPPLF SNN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 129 | RRARSKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021594183.1 | 1e-80 | homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q0JKX1 | 8e-68 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 8e-68 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | A0A2C9UFF9 | 2e-79 | A0A2C9UFF9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_022041m | 4e-80 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 2e-69 | homeobox-leucine zipper protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0499s0009.1.p |