PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0498s0015.3.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 624aa MW: 72570.9 Da PI: 6.8392

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0498s0015.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.1	2.5e-22	14	101	5	90
FAR1 5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++A++ GFs+rk++s++s++ g +++r++vC+++g+++++kk+++++ r+r++ r+gC+ak+ ++ke ++w+v+++++ HnHel Kalax.0498s0015.3.p 14 NFARKNGFSIRKARSTESHNLG-VYRRDYVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKMYLTKEIvdgVAQWYVSQFSNIHNHELL 101 59**************7777.**************************************998766789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-20	14	101	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.5E-23	233	325	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.507	504	536	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-7	506	532	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.6E-4	511	538	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 624 aa Download sequence Send to blast
MKEMITQLLT HSFNFARKNG FSIRKARSTE SHNLGVYRRD YVCYRSGFNQ PRKKANVEHP 60 RERKSVRCGC DAKMYLTKEI VDGVAQWYVS QFSNIHNHEL LEDDQVRLLP AYRKIQEADQ 120 ERILLLSKAG FPVNRIVKVL ELEKGVQPGQ LPFIEKDVRN FVRTCKKTIQ ENDTLLTEKR 180 ENDTLEFLEA CKATAEKDFE FVYDYSTDEN GKVENIAWSY GQSVCAYTMF GDVVFFDTAY 240 HSITYGLLLG TWFGMDNHGK PILLGCVLLQ DETSRSFAWA FQSFHRFMRG RQPQTIVTDM 300 DTAIIHAVAN ELPNTKHVIC LWHIISKLSS WFTVPLGLHY GDFRSEFEVT CFLERIEEFE 360 HQWNHLVTQY ELGSDKHMAL LYTYREYWPF CYINNYFLAR MVTKEFLKSM STFLKKILSS 420 QSCLQGFFEE IAAAVSIDYQ KNDDIQYTYI KTCMPVEEHA RSILTPYAFS VLQNELVLSM 480 QYEITDMPDG SYHLRHYKGL DKALVIRAEP IQCSCKAFDY SGILCRHCLR ILVLKNCFQL 540 PETYFLPRWR SDSNFYSVDN QNQQTGTDER VQAYHTLSAS LLSESIMTRE RFNYVRRELG 600 GLLENVRNMP AIIEAAVLES LAG*

Sequence ? help Back to Top

Protein Sequence Length: 624 aa Download sequence Send to blast

MKEMITQLLT HSFNFARKNG FSIRKARSTE SHNLGVYRRD YVCYRSGFNQ PRKKANVEHP  60
RERKSVRCGC DAKMYLTKEI VDGVAQWYVS QFSNIHNHEL LEDDQVRLLP AYRKIQEADQ  120
ERILLLSKAG FPVNRIVKVL ELEKGVQPGQ LPFIEKDVRN FVRTCKKTIQ ENDTLLTEKR  180
ENDTLEFLEA CKATAEKDFE FVYDYSTDEN GKVENIAWSY GQSVCAYTMF GDVVFFDTAY  240
HSITYGLLLG TWFGMDNHGK PILLGCVLLQ DETSRSFAWA FQSFHRFMRG RQPQTIVTDM  300
DTAIIHAVAN ELPNTKHVIC LWHIISKLSS WFTVPLGLHY GDFRSEFEVT CFLERIEEFE  360
HQWNHLVTQY ELGSDKHMAL LYTYREYWPF CYINNYFLAR MVTKEFLKSM STFLKKILSS  420
QSCLQGFFEE IAAAVSIDYQ KNDDIQYTYI KTCMPVEEHA RSILTPYAFS VLQNELVLSM  480
QYEITDMPDG SYHLRHYKGL DKALVIRAEP IQCSCKAFDY SGILCRHCLR ILVLKNCFQL  540
PETYFLPRWR SDSNFYSVDN QNQQTGTDER VQAYHTLSAS LLSESIMTRE RFNYVRRELG  600
GLLENVRNMP AIIEAAVLES LAG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010657467.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_010657468.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_010657469.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_019078798.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_019078799.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_019078800.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	F6HHP5	0.0	F6HHP5_VITVI; Uncharacterized protein
STRING	VIT_12s0057g00960.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Kalax.0498s0015.3.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]