PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0497s0009.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 274aa    MW: 30585.6 Da    PI: 8.8818
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0497s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.7e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++l  +++ +G g+W++ ++  g+ R++k+c++rw +yl
  Kalax.0497s0009.1.p 14 KGAWTKEEDDRLMSYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                         79******************************99************97 PP
2Myb_DNA-binding55.41.4e-1767111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++T+eEde +++++ +lG++ W+ Ia +++ gRt++++k++w+++
  Kalax.0497s0009.1.p  67 RGNFTEEEDEVIIKLHSLLGNK-WSIIAGRLP-GRTDNEIKNYWNTH 111
                          89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.083961IPR017930Myb domain
SMARTSM007174.5E-121363IPR001005SANT/Myb domain
SuperFamilySSF466893.95E-2913108IPR009057Homeodomain-like
PfamPF002499.2E-151461IPR001005SANT/Myb domain
CDDcd001671.49E-91661No hitNo description
PROSITE profilePS5129428.64262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2765116IPR009057Homeodomain-like
SMARTSM007172.0E-1666114IPR001005SANT/Myb domain
PfamPF002491.6E-1567111IPR001005SANT/Myb domain
CDDcd001674.60E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDDRLMSYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDEVIIK LHSLLGNKWS IIAGRLPGRT DNEIKNYWNT HIRRKLLNRG  120
IDPATHRSIN DPSTPERSTN TATTISFGAS NNKNMSAASR DQVEHQKSMA VRGMFGCEVE  180
RFPLQEQHGI PDLNLELKIS PPSCYQYQQR EAVLKSGRNH SAAVCFACSL GLKSSNDCSC  240
GDYVSAGNNS AVVQHDFLGL KGGVLDYRSL EMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-291311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147038.11e-125PREDICTED: myb-related protein 308-like
SwissprotP813931e-115MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A314ZAJ71e-124A0A314ZAJ7_PRUYE; Myb-related protein 308
STRINGXP_004172908.11e-125(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-108myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]