PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0490s0014.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WRKY

Protein Properties

Length: 312aa MW: 34859.8 Da PI: 5.5077

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0490s0014.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	87.9	8.9e-28	144	204	1	58
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 ++Dg+nWrKYGqK+++g+++pr+YYrCt++ gC ++k+v+rs+edp ++ +tY+g+H++ Kalax.0490s0014.1.p 144 VEDGFNWRKYGQKDIQGANHPRGYYRCTHRqqaGCLATKHVQRSDEDPLLFYVTYRGKHTC 204 58*************************98999***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.4E-27	141	205	IPR003657	WRKY domain
SuperFamily	SSF118290	8.63E-25	143	205	IPR003657	WRKY domain
SMART	SM00774	1.8E-37	144	206	IPR003657	WRKY domain
PROSITE profile	PS50811	23.284	145	202	IPR003657	WRKY domain
Pfam	PF03106	9.7E-26	145	204	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MAMVMSGGRQ EEQIWENYSS KIIVSNEIQR GVEAAKSLRI LLMHHHHLNL LSNSQLSSSA 60 QVLLEEIISS SERALSILKS CCQPGDASVN NIADCENIHN QQFLISTILQ KYLTYDDVVF 120 RKSTMMKFTK QVRVSLETGF DGTVEDGFNW RKYGQKDIQG ANHPRGYYRC THRQQAGCLA 180 TKHVQRSDED PLLFYVTYRG KHTCYSQSET PPLLLPNRND NLGQHYQTTC TTNTKADADV 240 SLPPFPDDIY LLASSSSLLP EDNVGHFDSA GCCFQQDQNS PAGISESQVE SCPDSDDGSH 300 VSFDLSNYVL F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	3e-18	144	204	8	68	OsWRKY45

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24110.1	3e-30	WRKY DNA-binding protein 30

Link Out ? help Back to Top
Phytozome	Kalax.0490s0014.1.p