PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0485s0003.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 576aa    MW: 63888.3 Da    PI: 5.5986
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0485s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS287.53.6e-882065734374
                 GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl....fsevs 88 
                           Ll++Ae v ++++e+a++lL++ + l+spd+ ++qR+++yfteAL++r+ r +++ +++ ++ +++ + n  e++++ +     f++  
  Kalax.0485s0003.1.p 206 SLLSAAESVGNQQFERASRLLSQCEFLSSPDACTVQRVVHYFTEALRERIDReTGNFTSNYFKEKQACDLN--EAMKYGNPitlsFYQDI 293
                          699*************************************************4455555555555555433..333322214457***** PP

                 GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                          P+ + sh+t  qaI+e v++++++H iDf++ +G++   L+qaLa+R e   +l+iT+v     +s+ +le tg rL +fA+++++p++f
  Kalax.0485s0003.1.p 294 PLSQASHFTGIQAIVEHVATAKKIHMIDFGLRHGVHSTILMQALAARHEAVEHLKITAVTT---TSRSKLEPTGARLLSFARTMKIPLSF 380
                          ************************************************************9...689*********************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          ++++  ++ dl+ e ++++ +E ++V   l + +l+    +++++ d++++++k+l P ++v++e ea+hns+ F++rf+eal +ysa f
  Kalax.0485s0003.1.p 381 DIVMIGDMLDLREELFELDGEEEVVVYAPLLMTTLV----AQRDRLDHLMSVLKNLDPCLMVMAEVEANHNSPAFVNRFIEALFFYSAYF 466
                          ***999************************888887....55556777****************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                          d l++ + +++  ri  E ++++r i+n+va+ega+r+ rh + + Wr+ + ++G+ + ++s  a+ qa+l+l++++ +   +++ + +s
  Kalax.0485s0003.1.p 467 DFLASCMENDNPGRIAAETVFFSRCIRNIVATEGADRTTRHVKIGVWRSYFARFGLVETEFSAAATYQARLVLEQFScGSSCTIDTDGKS 556
                          *****************************************************************************9999********* PP

                 GRAS 358 lvlgWkdrpLvsvSaWr 374
                          l++gWk+ pL s+S W+
  Kalax.0485s0003.1.p 557 LIMGWKGTPLHSLSIWK 573
                          ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.044177552IPR005202Transcription factor GRAS
PfamPF035141.3E-85206573IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MLRDEQYESV SHERLISFKG NKGSPKLYRG EEDGRNSGAA DPGSSNLGSL GEGLCSSKYL  60
QQHQQVSTGY GFFDDVNFDA DSPPVQQCFD EMSKLSKLHS EAPAVEPRKE AGSSVQYASL  120
ELLNNYGRGV KRLSELRPSP SQARVDSSWT RPKLSIDEIL KMAAENFISS SSHGVDGSPI  180
LGGAAHGVYF SGLTDDQVTD VELLVSLLSA AESVGNQQFE RASRLLSQCE FLSSPDACTV  240
QRVVHYFTEA LRERIDRETG NFTSNYFKEK QACDLNEAMK YGNPITLSFY QDIPLSQASH  300
FTGIQAIVEH VATAKKIHMI DFGLRHGVHS TILMQALAAR HEAVEHLKIT AVTTTSRSKL  360
EPTGARLLSF ARTMKIPLSF DIVMIGDMLD LREELFELDG EEEVVVYAPL LMTTLVAQRD  420
RLDHLMSVLK NLDPCLMVMA EVEANHNSPA FVNRFIEALF FYSAYFDFLA SCMENDNPGR  480
IAAETVFFSR CIRNIVATEG ADRTTRHVKI GVWRSYFARF GLVETEFSAA ATYQARLVLE  540
QFSCGSSCTI DTDGKSLIMG WKGTPLHSLS IWKFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-3621157226377Protein SCARECROW
5b3h_D2e-3621157226377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006419398.10.0DELLA protein RGL1
RefseqXP_006488851.10.0DELLA protein RGL1-like
TrEMBLA0A2H5N6800.0A0A2H5N680_CITUN; Uncharacterized protein
TrEMBLV4RFL40.0V4RFL4_9ROSI; Uncharacterized protein
STRINGXP_006488851.10.0(Citrus sinensis)
STRINGXP_006419398.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-44RGA-like 1