PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0484s0022.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 333aa MW: 37058.3 Da PI: 5.906 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEde l ++++ G g+W+++++ g+ R++k+c++rw +yl Kalax.0484s0022.1.p 14 RGRWTAEEDEVLMKYIQVNGEGSWRSVPKNAGLQRCGKSCRLRWINYL 61 8*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51 | 3.3e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++E+ l++ +++ lG++ W++Ia +++ gRt++++k++w+++l Kalax.0484s0022.1.p 67 RGSITPQEENLIISLHASLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112 7889******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.409 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.03E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.42E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.861 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.19E-10 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 333 aa Download sequence Send to blast |
MGRTPCCEKV GLKRGRWTAE EDEVLMKYIQ VNGEGSWRSV PKNAGLQRCG KSCRLRWINY 60 LRPDLKRGSI TPQEENLIIS LHASLGNRWS LIAGHLPGRT DNEIKNYWNS HLNRKLHGFT 120 PSPEKNESFE IFARNIDARG DKKSSSGSGM TKKDTGLRRS ASAENHEPAA RAKSMQSITD 180 QLEPLDDVGR GELIRVNPKT GISVPEPNDF IGKHMEAPCS NEESIGSVML CPETQGAWEG 240 LEYETKGAGG LAEHGGLDDI IAPLQVTSST HRRENGGGWG YPTIGDSREW YTGAPSINQE 300 WVDWQYMDGL KKLDSEEDGE MLSWLWNDNY GI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-24 | 12 | 116 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47460.1 | 7e-72 | myb domain protein 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0484s0022.1.p |