PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0483s0024.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YC | ||||||||
Protein Properties | Length: 268aa MW: 29343.4 Da PI: 4.8334 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 57.3 | 3.4e-18 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++ad+dv +i+ +Pvl+ska elf+ +l ++ + ++ +t+ ++ +v+r ifdfl ++v + Kalax.0483s0024.1.p 6 DTRFPAARIKKIMQADDDVGKIAMAVPVLVSKALELFLQDLCDHTYGITVQTGAKTVSSLHLKHCVQRYSIFDFLSEVVNK 86 5789************************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.7E-24 | 3 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.75E-18 | 4 | 88 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.3E-18 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MRKKLDTRFP AARIKKIMQA DDDVGKIAMA VPVLVSKALE LFLQDLCDHT YGITVQTGAK 60 TVSSLHLKHC VQRYSIFDFL SEVVNKVPDY SHSGTSGEVR TLSRRRKAAG DELTDSDEDS 120 KRSRLPETGH AASGGRGRGR GRGRGRGRIG RVAEPDHNQQ DIEPESAFNA TQAADNKDRD 180 LPSDVTEEAD GLTNPAVGKF DLNAEIKENE STPASEMPDI LSEHPAIQQE KFPGWSLSEI 240 DRIGINPLQL GSTNNTLDDE DYDEEDG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 1e-20 | 2 | 72 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 146 | RGRGRGRGRG |
2 | 137 | 147 | RGRGRGRGRGR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006432367.1 | 2e-83 | dr1-associated corepressor isoform X1 | ||||
TrEMBL | V4SXS0 | 5e-82 | V4SXS0_9ROSI; Uncharacterized protein | ||||
STRING | XP_006432367.1 | 8e-83 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 4e-65 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0483s0024.1.p |