PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0482s0022.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 349aa    MW: 39606.2 Da    PI: 6.8477
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0482s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd +l+ ++ q+G+g +W + ++++g++R++k+c++rw++yl
  Kalax.0482s0022.1.p 14 KGPWSPEEDAKLKAYIDQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                         79*********************************************97 PP
2Myb_DNA-binding35.22.9e-1171111446
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          + ++Ed l+  + +  G++ W+ Ia++++ gRt++++k++w++
  Kalax.0482s0022.1.p  71 FAEDEDNLICSLYATIGSR-WSIIAARLP-GRTDNDIKNYWNT 111
                          5689***************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.059966IPR017930Myb domain
SuperFamilySSF466892.98E-2611109IPR009057Homeodomain-like
SMARTSM007172.2E-121364IPR001005SANT/Myb domain
PfamPF002493.4E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-231569IPR009057Homeodomain-like
CDDcd001671.03E-81662No hitNo description
SMARTSM007172.0E-1067115IPR001005SANT/Myb domain
PROSITE profilePS5129415.8767117IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2270117IPR009057Homeodomain-like
PfamPF002492.1E-1071111IPR001005SANT/Myb domain
CDDcd001673.75E-773113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKAYID QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FAEDEDNLIC SLYATIGSRW SIIAARLPGR TDNDIKNYWN TKLKRKLLGK  120
QRKENARRES LLKQQVEKEE SKYQGPQLYM VHANQHEFMS VHYNTQECFS VSSTMLGMPY  180
PNQQVYTYDD RQVDYTYDDR QVDDTNGRTT AINHQYIQEH LHGEAYNPNI NLEYYNSNSG  240
LLSNLESEAE DADPNFLVDG VPINFSSMKK QWFEEFLFRS NQLGFMNMVT GSVSSSSGGE  300
VGTIPKESTT SWGDRAVTTL MPSSSFQLAD FQQWGSDSNG IHIASIQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23141177108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028057708.13e-87transcription factor RAX3-like
RefseqXP_028057709.13e-87transcription factor RAX3-like
STRINGcassava4.1_028492m2e-86(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.16e-75myb domain protein 84