PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0482s0009.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 266aa    MW: 29246.1 Da    PI: 9.6682
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0482s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.53.6e-191560147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W++eEd+ l  +v+q+G ++W++I+r ++ gRt+k+c++rw + 
  Kalax.0482s0009.1.p 15 KGPWSPEEDDALNTLVQQHGARNWSSISRSIP-GRTGKSCRLRWCNQ 60
                         79******************************.***********985 PP
2Myb_DNA-binding52.71e-1669111347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++++eEde +++a++++G++ W+tIar +  gRt++ +k++w++ 
  Kalax.0482s0009.1.p  69 PFSQEEDETIIRAHARFGNK-WATIARFLT-GRTDNAIKNHWNST 111
                          89******************.********9.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.9971065IPR017930Myb domain
SuperFamilySSF466896.11E-3212108IPR009057Homeodomain-like
SMARTSM007171.9E-151463IPR001005SANT/Myb domain
PfamPF002497.4E-181560IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-261668IPR009057Homeodomain-like
CDDcd001673.87E-151759No hitNo description
SMARTSM007172.6E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129420.74566116IPR017930Myb domain
PfamPF002493.2E-1469111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2369115IPR009057Homeodomain-like
CDDcd001678.54E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MAMSCGRRDT SDRIKGPWSP EEDDALNTLV QQHGARNWSS ISRSIPGRTG KSCRLRWCNQ  60
LSPQVQHRPF SQEEDETIIR AHARFGNKWA TIARFLTGRT DNAIKNHWNS TLKRKCSAVR  120
SGPEPTRPLK RSVSAGAAPV QFYPGSPSGS DSSESSNQGL VKMASLSEEL ETSLSLSLSL  180
PGQVADSAEL TQSPAVQMTV EQQIAKRIEA RMPENGPVGL TTEMMGVMQE MIRKEVRSYM  240
AGMKICSSGF RDDMGLSRIG FNKIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-38141163105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-38141163105C-Myb DNA-Binding Domain
1msf_C2e-38141163105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020210181.15e-93transcription factor MYB44
SwissprotO231602e-78MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A151U4241e-91A0A151U424_CAJCA; Transcription factor MYB44
STRINGVIT_07s0129g01050.t014e-90(Vitis vinifera)
STRINGXP_007155887.12e-90(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.12e-69myb domain protein r1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]