PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0465s0024.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 385aa    MW: 42804.2 Da    PI: 6.5101
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0465s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1683.2e-52231492128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          ppGfrFhPtdeel+++yL+ kv + ++     i+evd++k+ePwdLp  +k +++ewyf+s rd+ky+tg r+nrat +gyWkatgkdke
  Kalax.0465s0024.1.p  23 PPGFRFHPTDEELITFYLASKVFHGSFCP-VDIAEVDLNKCEPWDLPDVAKMGKREWYFYSLRDRKYPTGLRTNRATGTGYWKATGKDKE 111
                          9**********************999655.34***************88888999*********************************** PP

                  NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++++ +g+ +g+kktLvfy grap+gekt+Wvmheyrl
  Kalax.0465s0024.1.p 112 IHNAaTGAMIGMKKTLVFYLGRAPRGEKTKWVMHEYRL 149
                          **9878899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-6217171IPR003441NAC domain
PROSITE profilePS5100557.31622171IPR003441NAC domain
PfamPF023651.8E-2723149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MLLGIEDVLC ELASEEITGH GYPPGFRFHP TDEELITFYL ASKVFHGSFC PVDIAEVDLN  60
KCEPWDLPDV AKMGKREWYF YSLRDRKYPT GLRTNRATGT GYWKATGKDK EIHNAATGAM  120
IGMKKTLVFY LGRAPRGEKT KWVMHEYRLH GDFFFRAAAK EEWVICRIYH KTGDKKNMLL  180
NEVAAGSQLQ PLLAPGAYMT SSTTRNESYL PQLIDSQLMS SQFLHNQTSG FPAESVSKEA  240
QRRPPLTYNN NLFNFQPESS YYPASAAEHT SLSSMLIKSL LSSEDPRSLK QANNNDASGH  300
VKAEPSFQGL LPGADSLEWF HELQQAASTQ FINPPLLSNS GGESCSAYVG QVADGAHLNR  360
AGCLQMVVDP NYRIPNGEAW ALDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-51141719165NO APICAL MERISTEM PROTEIN
1ut4_B3e-51141719165NO APICAL MERISTEM PROTEIN
1ut7_A3e-51141719165NO APICAL MERISTEM PROTEIN
1ut7_B3e-51141719165NO APICAL MERISTEM PROTEIN
3swm_A3e-511417112168NAC domain-containing protein 19
3swm_B3e-511417112168NAC domain-containing protein 19
3swm_C3e-511417112168NAC domain-containing protein 19
3swm_D3e-511417112168NAC domain-containing protein 19
3swp_A3e-511417112168NAC domain-containing protein 19
3swp_B3e-511417112168NAC domain-containing protein 19
3swp_C3e-511417112168NAC domain-containing protein 19
3swp_D3e-511417112168NAC domain-containing protein 19
4dul_A3e-51141719165NAC domain-containing protein 19
4dul_B3e-51141719165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313889.11e-112protein CUP-SHAPED COTYLEDON 3-like
RefseqXP_012444453.11e-112PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
RefseqXP_012444454.11e-112PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBLA0A1R3H2D71e-112A0A1R3H2D7_COCAP; No apical meristem (NAM) protein
STRINGGorai.009G186000.11e-112(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.17e-97NAC family protein